Oncorhynchus nerka (sockeye salmon): 115105032
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Entry
115105032 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 1-like
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115105032
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115105032
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
115105032
NCBI-ProteinID:
XP_029482422
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Position
LG22:11352217..11410779
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AA seq
805 aa
AA seq
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MVKWSLAPSSGMHISVLPYSFSVAMAALYQVTDVSSPDKFLALKDVREVKEETTLDEKLF
LLACEKGDYYMVKRLLEEKTELNINCVDVLGRDAVTISIENQNLDILKLLLEHGCQATDA
LLVAIDSEVVGAVDILLNHHPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYE
ILTMLLKQDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDP
ILRAFELSADLRELSLVEVEFRNDYEELAKQCKMFAKDLLAQARXSRELEVILNHMANED
TVDKRGLMEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMST
VLSVAVLWPLLSLCYLVVPRSRVGHIIHTPFVKFIIHSASYFTFLLLINLYSLVYNEGKK
NTMGPALEMIDYLLILWIIGMVWSDVKRLWYEGLEDFLDESRNQLSFVMNSLYLSTFALK
IVAHSKFKNVEDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISVG
QMLQEFGKFLGLFLLVLISFTIGLTQLYGKDQKDPAKSPAKDCEGIFCQQQSNDAFHTFM
GTCYALFWYIFSLAHVALFVTRINYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKS
FRQIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLLTSMSKWICSHTST
GKVKRQNSLKEWRNLKRKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDL
SKFRNEMRDLLGFRTSKYAMFYPRS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggttaaatggtcgctggcgcctagtagtgggatgcacatcagtgtcctgccctactcc
ttctccgtcgcaatggccgctctatatcaggtcacggacgtgtcctctccggataaattt
ctggccctgaaagacgtgagggaggtgaaggaggagacgactctggatgaaaagctcttc
ctactggcctgtgagaaaggtgactactacatggtgaagagactactggaggagaagaca
gagctcaatatcaactgtgtagacgtgctggggagagacgctgtcaccatctctatagag
aaccaaaacctggacatccttaagcttctgctggagcacggctgccaggcaacagatgct
ctgttagtggccattgactcggaggtggtgggagctgtggacatcctcctcaaccatcac
cccaggaggtcctctaagccctccatcgctaaactgatgcagcgcatccagaaccccgag
tactccaccaccatggacgtggctccagtgatcctggcggcccataggaacaactatgag
atactgaccatgttgctgaagcaggatatctccctgcccaggcctcatgctgtgggctgc
gagtgtactctctgtaatgccaagaacaagaaggacagcctacggcactccaggtttcgt
ctggacatctacaggtgtctggccagcccatctctgattatgctgaccgaggaggacccc
atcctcagggcctttgagctgagtgcagacctcagggagctcagcctggtcgaggtggag
ttcaggaatgactatgaggagctggctaagcagtgtaagatgtttgctaaggatctcctg
gcccaggcacgtnactccagagaactggaagtgatcctcaaccacatggccaatgaggac
acagtggacaagagaggcctgatggaggaacgcatgaacctcagccgactcaaactagct
atcaagtacaaccagaaagagtttgtggcccagtccaactgccagcagttcctcaacacc
gtctggttcggcgagacggccagctaccggcgtaaacacacgtgtctgaagatgtccacg
gtactgagcgtggcggtgctgtggccgctgctctccctgtgctacctggtggtgccgcgc
tcccgcgtgggccatatcatccacacgcccttcgtcaagttcatcatacacagtgcctcc
tacttcaccttcctcctgctcatcaacctgtactctctggtgtacaacgagggcaagaag
aacaccatgggccctgccctggagatgatcgactacctgctcatactctggatcataggg
atggtgtggtcggacgtgaagcgtctatggtacgagggcttggaggacttcctggatgag
tcgaggaatcagctgagcttcgtcatgaactctctctacctgtccaccttcgccctcaag
atagtggctcacagcaagtttaagaacgtggaggacacagagaggaaaaattgggatgcc
ttccaccccatccttgtggctgaggggctgtttgccttcgctaacgtcctgagctaccta
cgactgttcttcatgtacaccaccagctcaatactgggcccactgcagatctccgttggc
cagatgctgcaggagtttggtaagttcctgggtctgtttctgctggtgctcatctctttc
accatcggtctgacgcagctctacgggaaggatcagaaggacccggccaagagtcccgcc
aaagactgtgagggcatcttctgtcagcagcagagcaacgacgccttccacacgttcatg
ggaacgtgctacgcactgttctggtacatcttttctctggcccacgtggctctcttcgtg
acccggatcaactacacggaggagctgaggtcatttgtgggagccctcattgtgggcacg
tacaacatcgtggtggtcatcgttctcaccaagctgctggtcgccatgctccacaagagc
ttcaggcagatcgctaaccacgaggataaggagtggaagtttgcacgcgccaagctgtgg
ctgagctactttgacgacaagtgtaccctgccgccgcccttcaacatcctaccctccccc
aagacggtgtgttaccttctgaccagtatgagtaaatggatctgctcccacacctccacg
gggaaggtcaagagacagaacagcctcaaggagtggaggaatctgaagcggaagcgtgat
gagaactaccagaagatcatgtgttgtcttgtccatcgctacctgacgtccaccaggcag
aagatgcagagcaccgaccaggccaccgtagagaacctcaacgacctgcggcaggacctc
tccaagttccgcaacgagatgagagacctgctgggattcagaacctccaagtacgccatg
ttctacccccggagctaa
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