Oncorhynchus nerka (sockeye salmon): 115105035
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Entry
115105035 CDS
T07952
Name
(RefSeq) uncharacterized protein LOC115105035 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115105035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115105035
Membrane trafficking [BR:
one04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115105035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
PH
SH3_1
SH3_2
SH3_9
Motif
Other DBs
NCBI-GeneID:
115105035
NCBI-ProteinID:
XP_029482429
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All DBs
Position
LG22:11512213..11588492
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AA seq
1279 aa
AA seq
DB search
MRPTEKDRDSVVLSGHIILSNSTSGLESPSLCLPEDSSSIESSEHQLDSLTFDPDDLRVM
TLPHDRDHASSERRSSPTPTSVSYDFDTTSTNSEETEESILPVSGGNTNLHKPMKSNSKD
SQAGRSKSSKFSVFAKMPSFRKGKSLKNAKEEDLPDLGLSRDMGGGQVGQGGDTSDDDNV
FLKGDILSQTVQQPFSSGLGGRYETEQEDYSFFPSTPRTRHVRLLFRDGPGDTPLTSQSG
GLRHNQTGAPEGLHGYKRSKSSDSLNLRMRFAQAHKSLSSLFESRSMDKENEEEQVNIET
GSEGEVGRAKQSWRRLKRERAKEAELLRRTLSVPVGDGVKGGDGEDGGVRTPRQTHSDYA
SRSASVLSVPGSPSSLRALCLTDPLTKRGFQDSHSMVGENTPLGCKSEGQRRKGKVPPNG
LSINFSDSGPHSSDDSEAPPTNDSSPLSPMSPASLATLANHLSWSSSRSPGGAYESTASS
MAATPDTPVRPMSPKPHSPRPAAQHRPFRYPQSASARASALSLLLMAQSTSVEGLSDPPE
KPKTLKPRAGPLGSSSLSPLEDSGVDSQSQISLLTPMSINQFETQGGCRPTSQAGGEKRL
AELKSPGSGLVTTASALRPPPGHRPNRERDRGPRRHRCSSDDLWIEEEKRRKRKLARVVR
GSLGQLNTHCPEDLEKARARVSLSTMEEFSGIPLKAHCFSQSTPIGLDCLGWRRRISYPS
VIVPDGGGEKAGLGDDLGSDEDLYEEFRSSGHRCGHPGGGGEQLAINELISDGSCVYAEA
LWDHVTMDDQELGFKAGDVIEVVDATNKEWWWGRILDSEGWFPASFVRLRVNQDEPMEEY
LAQLEEAGAGEVDRPGVGLILGPGLPCKDQMRTNVINEIMGTERDYIKHLKDICEGYIKQ
CRKRIDMFTEEQLRCIFGNIEDIYRFQKKLLKGLEKRFNKEQPHLSEIGSCFLEHQTDFQ
IYSEYCNNHPNACVQLSRLMKTNKYVFFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQ
LAELLKYTNPQHRDYKDVEAALNAMKNVARLINERKRRLENIDKIAQWQSSIEDWEGEDI
LSMSSDLIFSGELTKISQPQARSQQRMFFLFDHQMVYCKKDLLRRDMLYYKGRMDMDLME
VVDVEDGKEKDFNVSVKNALKLRSLAGDEVHLLCAKKPEQKQRWLRAFQDERTQVQHDLE
TGFSITEVQKKQAMLNACKSHPAGKPKAVTRPYYDFLLRQKHPSLPSTVPQQQVFMLAEP
KRKATTFWQNIGRLTPFKK
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgaggcccactgagaaagacagggacagtgttgtcctgtctggtcacatcatcctgtca
aactccacctccggccttgagagcccgtcgttgtgtctccccgaggactcatccagtatc
gagtcatcagagcaccaactggactcgttgacctttgaccccgatgacctcagggttatg
accttaccacacgacagggaccatgcaagcagcgagagacgctccagtccaacccccacc
tctgtgtcctacgactttgacactaccagcactaacagtgaggagacggaagagtccatc
ctgcctgtctcgggggggaacaccaacctccacaaacccatgaagagcaactctaaagac
agccaggcagggaggtccaagagctccaagttctctgtttttgccaagatgccttctttc
aggaaggggaagagtctgaagaatgccaaggaggaggacttgcccgacctgggcctgagc
agggatatggggggaggacaggtgggacaagggggagacacctcggatgatgacaatgtt
ttcttgaagggggacatcctgagccagacggttcagcagcccttctcctctggtctgggt
ggtcgctacgagacagagcaggaggattacagcttcttcccctccacaccacgcacccgc
catgtccgcctgctcttcagggatgggcctggggacacccccctgacctcccagtccgga
ggtctcagacacaaccagaccggggcccccgagggcctgcacggctacaagaggagcaag
agctctgacagcctcaacctccgcatgcgcttcgcccaggcccacaagtccctgtccagc
ctgtttgagtctcgctccatggacaaggagaacgaggaggagcaggtgaacattgagact
gggagcgaaggggaggtggggcgagccaaacagtcctggaggaggctaaagagagagagg
gccaaggaggcagagctgctgaggaggaccctgtctgtcccggtcggggacggggtcaag
ggaggggacggtgaggatgggggtgtgaggacgcccagacagacccacagtgactatgcg
tcccgctctgcctcagtgctcagtgtccctgggtccccctcctctctcagggccttgtgt
ctcaccgaccccctcactaagaggggcttccaggacagtcacagcatggtcggggagaac
accccactgggctgcaagtcagagggccagaggaggaaagggaaagtcccacccaacggc
ctgtcaatcaacttctctgactccggaccgcactcctcggacgactctgaagccccaccc
acaaacgactccagccccctgtcgcccatgagccccgcctccctggccaccctagccaat
catctgtcttggtccagctccaggtccccaggaggagcctatgagagcacagcgtctagc
atggcagcaacaccagacaccccagtgagacccatgagccccaagccccacagccccaga
ccggctgcccagcacaggcccttccgctacccccaatctgcctcagcccgggcctcagcc
ctgtccttgctcctcatggctcagtcaaccagtgtagagggcttgtctgacccaccagag
aagcccaagaccctgaagcccagagcggggccgctaggctcctcctccctcagtccattg
gaggacagtggagtggacagccaatcacagatcagcctgcttacacctatgtccatcaac
cagtttgagactcagggtggctgtagacccaccagccaggcaggaggagagaagaggcta
gcagagcttaagtcccctgggtctggactggtcactactgcctcagccctcagaccacca
ccaggccacaggccgaacagggagagggacaggggtccaagacgccaccgctgctcctca
gacgacctgtggatcgaagaggagaagagacggaagcggaagctggcccgagtcgtgagg
ggcagcctgggacaactcaacacccactgtcctgaagatctggagaaagcacgggctcga
gtgtccctgtcgaccatggaggagttctccggcattcccctgaaggcccactgcttctcc
cagagcacccccatcggacttgactgtctgggctggagacgacgcatctcctacccctcg
gtgatagtaccagacggaggtggagagaaggccggtctgggtgatgatctaggcagtgat
gaagacctgtatgaagagttccgcagctccggacatcgctgtggacacccagggggaggt
ggagaacaactggccataaatgagctgatcagtgatggcagctgtgtgtacgccgaggcc
ctgtgggaccatgtcaccatggacgaccaggagcttggcttcaaggcgggggacgtcatc
gaggtagtggatgccaccaacaaggagtggtggtggggacgcatcctggacagtgagggc
tggttcccagctagctttgttcggttgcgtgtgaaccaggatgagcccatggaggagtac
ctagcccagctggaggaggctggggctggggaagtggaccggccaggggtgggtctgatc
ctgggaccaggcctgccgtgtaaggaccagatgaggactaacgttatcaatgagatcatg
ggcacagagagagactacatcaaacacctcaaagacatctgtgagggttacatcaagcag
tgccgtaagaggatagacatgttcacagaggagcaactgcggtgtatattcggcaacatc
gaagacatctaccgcttccagaagaagttactgaaaggtctggagaagaggttcaacaag
gagcagccgcacctcagcgagatcggatcctgcttcctcgaacaccaaacagacttccag
atctactcggagtactgtaacaaccaccccaacgcctgtgtgcagttgtccagactgatg
aagaccaacaagtacgtgttcttcttcgaggcctgtcgtctgctgcagaagatgattgac
atctcgctggatggcttcctgctcacgcccgttcagaagatctgcaagtaccctctgcag
ctggccgagctactgaaatacaccaaccctcagcatagggactataaggacgtggaggct
gccttgaacgccatgaagaacgtggccaggctgatcaacgagaggaagcggcgcctggag
aacatcgacaagatcgcccaatggcagagctccatagaggactgggagggagaagacatc
ctcagtatgagttcagatctgatcttctctggagagctgacgaagatctcccagcctcag
gctaggagccagcagcgcatgttcttcctcttcgaccaccagatggtctactgcaaaaag
gacctcctgcgcagggacatgctgtactataagggtcgtatggacatggacctgatggag
gtggtggatgtggaggacgggaaggagaaggacttcaacgtgtcggtgaagaacgctctg
aagctgcgctcgctggcgggggacgaggtccacctgctgtgtgccaagaagcctgagcag
aaacaacgctggctccgagccttccaggacgagaggacgcaggtgcagcacgacctcgaa
acaggattctccatcactgaggtccagaagaaacaggccatgctgaacgcctgcaaaagc
catccagctgggaagcccaaagcggtgacccggccctactatgacttcctgctgcgtcag
aagcacccgtctctgcccagcaccgtaccccagcagcaggtcttcatgctggctgagccc
aaacgcaaggcgaccaccttctggcaaaacatcggcagactgacgcctttcaagaagtga
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