Oncorhynchus nerka (sockeye salmon): 115105059
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Entry
115105059 CDS
T07952
Name
(RefSeq) polypyrimidine tract-binding protein 2-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115105059
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115105059
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
115105059
NCBI-ProteinID:
XP_029482462
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All DBs
Position
LG22:13002480..13019717
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AA seq
524 aa
AA seq
DB search
MDGIGDVAVGVKRGSDELLSSSLYNSGSDMSSISDGTSNGSDSKKLRVEDRMEAPPSRVL
HIRKLPNETSETEVIALGLPFGKVTNILTLKGKNQAFLELGTEEAAITMVNYYSTVTPHV
RNVPVFIQYSNHKELKTDAGNQRAQAVLQAVSAVQGGGTPTSGSDLALTAASSPVLRIII
DNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFNDPSTAQQAKIALDGQNIYN
SCCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAMDPNMAAAFQGKDSNSLLGK
IPGALSPLNAAAAAAAAAGRVALSGHSGSSGVLLASNLNEEMVTPQSLFTLFGVYGDTQR
VKILYNKKDSALIQMADASQAQLAMSHLNGQKMYGKVIRVALSKHTSVQLPRDGLDDQGL
TKDFTNSPLHRFKKPGSKNFQNIFPPSTTLHLSNIPTDVTEEDLRLLFSNAGGTVNAFKF
FQDHKMALLQMSTVEEAIQGLIDLHNYNMGDNHHLRVSFSKSSI
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggacggtattggcgatgttgcagttggcgtaaagagaggatcagatgagctgctgtca
agcagtctctacaacagtggctctgacatgagcagtatcagtgatggtacgtccaacggg
agtgacagtaaaaaactgagagtggaagacaggatggaggctcctccttctcgtgtgttg
cacatcagaaaactgcccaacgaaacttcagaaacggaggtcattgccctggggttacct
ttcgggaaggtcaccaatatcctgactctgaagggaaaaaaccaggctttcttggagctg
gggacagaggaagcggcaattactatggtcaactactactctactgtgacaccgcatgtt
cgtaatgtccccgtattcatccagtactccaaccacaaagaactcaaaacagacgccgga
aaccagcgggcccaggcagtcctgcaggcggtgtcagcggtccaaggaggcggtacccct
acgtcgggttcagatctggctctaacagctgcatccagccctgtgctcagaataatcatc
gacaacatgttctacccagtcactctggatgtgctgcagcagatcttctcaaagttcggc
acggtcatgaagataatcaccttcactaagaacaatcagttccaggccctgctgcagttc
aacgacccatctactgcacaacaagccaaaattgccctggatggtcagaacatctacaac
tcgtgctgtacgctccgcatcgattactccaagctggtcaacctgaatgtcaagtacaac
aacgacaagagccgtgactacacccggccagagctccccgccggggatggacagcctgcc
atggaccccaacatggctgctgcctttcaaggcaaggactccaactctctgcttggtaag
atcccaggtgcgctgagcccgctgaatgctgcggcggcggcggctgctgctgcagggagg
gtggctctgtctggtcactctggctccagcggcgtgctcctggcctccaacctcaatgaa
gagatggttacgccccaaagtctgtttactctcttcggggtctatggggacacccagagg
gtgaagattctttacaataagaaggacagtgctctgatacagatggccgatgccagtcag
gcccagctagcgatgagtcacctgaacggtcagaagatgtatgggaaggtcatcagggtg
gctctgtccaagcacacctcagtgcagctgcccagggatggactggatgaccagggcctt
accaaggacttcaccaactcccccctgcaccgcttcaagaagcccggctccaagaacttt
cagaacatcttccctccctccaccacccttcacctctccaacatcccaacggacgtaact
gaagaagacctgagactactgttctccaatgccgggggcactgtgaacgcattcaagttt
ttccaggatcacaaaatggcgctgctccagatgtcgacggtggaagaggccatccagggt
ctgatcgacctccacaactacaacatgggtgacaaccaccacctgagagtgtccttctcc
aaatcctccatctaa
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