Oncorhynchus nerka (sockeye salmon): 115105108
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Entry
115105108 CDS
T07952
Symbol
zeb1
Name
(RefSeq) zinc finger E-box-binding homeobox 1
KO
K09299
zinc finger homeobox protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115105108 (zeb1)
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
115105108 (zeb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-Di19
zf-C2H2_jaz
Homeodomain
zf-C2H2_15
zf-H2C2_5
zf-met
zf-C2H2_6
Zn_SUZ12
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
115105108
NCBI-ProteinID:
XP_029482595
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All DBs
Position
LG22:complement(18006415..18073194)
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AA seq
1214 aa
AA seq
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MADGPRCKRRKQANPRRNNVTNYSNVVKTPGSDSDDEDKLHIVEEDGSLADGADCDSNVP
SEDHNGDRSDEAREECGSDGEDDGRTDALVEEMLQQGDTAVIYPEAPEDEPRQGTPEASG
HDENGTPDAFSQLLTCPYCSRGYKRYTSLKEHIKLRHEKSEDNFSCSQCSYTFAYRTQLE
RHMTAHKAGRDQRHVTQSGANRKFNCTECEKAFKYKHHLKEHLRIHSGEKPYECSNCKKR
FSHSGSYSSHISSKKCISVISAVNGRPRPSAKASQCPSPAMPASPSSTTTRTQIWDKPLQ
EQLPLNQIKSEPVDYEYKAMVLSPATTGGNGHGGGVLNGGAAGPLQGAVQAVMLPTMGLV
SPISINLADLQNILKVAVDGNMIRQMLENNAKAAGTGTGATGVPHQQLISAISLPIIGQD
GNATKIIINYSLDPSQTQLTAQNLKKEPQTLATMPGQPQAQPLAEVAIEPCSKAQQRLPE
DLTLSRPPRSKEEKMEEENEKEEETTKTCLLCGDCPGGLDVLHALEHCKKASGLRINGDK
SESAIASLLSEGVGNQPKNLLSLLKAYFALNAEPTKEELSKISDSVSLPTDVVKKWFDKM
QSSQVSLGAPTPPSEEEGPLSESPGATVVSPKVRPEQDTEGPTMMQSGPAEATPAEVNGS
MRSPASPTPLNLTAGGPVPAKPSSSDSTDGPLDLSLPKPTREEAAAAATYHASVYSHQDE
PLNLTKTCTTKKELPLAGAAGHHVTGQPVSLYTASPQSANPISIMTTQLPSGTIYAITDQ
GRAGMPCLRAVTTSNNQTILIPQLAYTYTTTATANSPAGTETQEKTTLQVNGIKEERQDT
SSEGVSTMEELNDSDSAPSRKKMRKTESGMYACDLCDKIFQKSSSLLRHKYEHTGKRPHE
CGICRKAFKHKHHLIEHMRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCKKEALEG
SQGGIGEEVLEEEMESPVGLALGLGGEQQEQSDSRPTSSHLDSDERGSSTREDEEESEEE
GEEEDMETAAGEEVEGDPDRVLDMDDIQVVRIGDEGGDEEEEAEGEKEEDTGREEGESEE
EQGVERVVVGGEGEEGEEEEEGVVGVEVKEEQEEEEVTGEKADTRQEEVEENREKEEEHG
GEKEQAEEQVEEELSEKEETMDTEKGLTSEDKEESGSRAVEESEVMKKNEGETNRNTVSE
DKNQTPTGEKGDPN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaagcaggcgaatccgaggaggaataacgta
accaactacagtaatgtggtgaagacccctggctcagactcagatgatgaggacaagctt
cacatcgtggaggaggacgggagtctggcagacggggcagactgtgacagtaatgtgccc
agtgaagatcacaacggagaccgctcagatgaagcgagggaggagtgtggttcagacggg
gaggacgatggcaggacggacgctctggtggaagagatgctgcagcagggagacacagcc
gtcatttacccagaagccccggaggacgagccacgccaagggacccccgaggccagcgga
catgacgagaacggcactccggatgcgttctctcagctcctcacctgtccctactgctcc
cgcggctacaagcgttacacgtccctgaaggagcacatcaagctgcgccacgagaagagc
gaggacaacttcagctgctcccagtgcagctacacttttgcctaccgcacacagctggag
agacacatgacggcccacaaagctggtagagaccagaggcacgtgacgcagtcgggggcc
aaccgcaaattcaactgcaccgaatgtgaaaaagcatttaagtacaagcaccacctgaag
gagcacctacgcatccacagcggagagaagccgtacgagtgctccaactgcaagaagcgt
ttctcccactcgggctcctacagttcccacatcagcagtaagaagtgcatcagcgtgatc
tcggcagtcaacggccgcccccggcccagcgccaaggcgtcccagtgcccgtccccagcc
atgcccgcctcgccctcctccaccaccacacgcacacagatctgggataaacctttacag
gagcaactacccctcaatcagatcaagagcgagccagtggactacgagtacaaggccatg
gtgttgtctccagcaacgacaggaggaaacggtcatggaggaggggtgttaaacgggggt
gccgcgggccccctgcagggtgcggtgcaggctgtgatgctccccaccatgggtctggta
tctcccatcagcatcaacctggcagacctgcagaacatcttgaaggtggcggtggacggt
aacatgatcagacagatgttggagaacaatgccaaggcagcggggaccggcacaggggcg
acgggtgttcctcaccagcagctcatctcagccatcagtctccccatcatcggtcaggac
ggcaacgctaccaagatcatcatcaactacagcctcgatcccagccagacccagctcact
gcccagaacctgaagaaagaacctcagactctggctacaatgccaggccagccccaggct
cagcccctggccgaggttgccatagagccctgcagcaaggcccagcagagactcccagag
gacctgacactcagcaggccccccaggagcaaagaggagaagatggaagaggaaaacgag
aaggaggaggagaccactaagacctgtctgctctgtggtgactgccccggtggtctggac
gtgctccacgcactcgagcactgtaagaaggcctcaggcctcaggatcaatggggacaaa
tcagagtcggccatcgcctcgttactgtccgagggggtcgggaaccagcccaagaacctc
ctgtccctcctcaaggcctacttcgccctaaacgctgagccaaccaaggaggagctcagc
aagatctcagattcagtcagcctgcccaccgacgtggtcaagaagtggttcgacaagatg
cagagcagtcaggtctcactaggagctccgacacctccgtctgaggaagagggacccttg
tctgagagtcctggggccacagttgtgtcccctaaggtaagaccagagcaggacacagag
ggtcccaccatgatgcagtccggcccagccgaggccactccggctgaggttaacggctcc
atgcgctccccagcctcccccacaccactaaacctgaccgccggggggcccgtcccagcc
aaaccctcctcctcggacagcactgatggccctctggacctgtcgctaccaaagcccacc
cgagaggaggccgcagccgccgccacttaccacgcctctgtttactcccatcaggacgaa
cccctgaacttgacgaagacttgcacaacaaagaaagaacttccgctcgccggcgccgct
ggccaccacgtgactggtcaacctgtgtccctgtacaccgccagcccacaaagtgccaac
ccgatcagtatcatgaccactcagctgcccagcgggaccatttatgccatcactgaccag
ggccgtgcaggcatgccctgcctccgggcagttaccactagtaacaaccagactatcctc
atcccacagctggcctatacctataccactacagctacagccaacagccctgcagggaca
gagacacaggagaagaccacactgcaagtcaatggcatcaaggaggagcgtcaggacacc
agctcagagggcgtgtccaccatggaagagctgaacgactcagactccgccccttccagg
aagaaaatgaggaaaacggagagtgggatgtacgcctgcgacctgtgtgacaagatcttc
cagaagagcagctctctgctccgacataaatacgaacacacaggcaagcgaccccacgag
tgcggtatttgcaggaaggccttcaaacacaagcaccacttgatagaacacatgcgtctc
cactctggggagaaaccctaccagtgcgacaagtgtggcaagcgcttttctcactcgggc
tcctactcccagcacatgaaccaccgttactcctattgcaagaaagaggcgctggaagga
agtcaaggaggtataggggaggaggtgctggaggaggagatggagagccctgtggggttg
gccctgggccttggaggggagcagcaggagcagtcagacagcaggcccacctcctcccac
ctggactctgacgagcgagggagcagcaccagggaggacgaggaggagagcgaggaggag
ggggaggaggaggacatggagacagcggcaggggaggaggtggagggggatccggacaga
gttctggatatggatgatatacaggtggtgcggataggagacgagggaggggacgaggag
gaagaggcggagggggagaaggaagaagacactggtcgagaggagggagagagtgaggaa
gagcagggagtggagagagtagtggtcgggggtgaaggggaggaaggagaagaagaagag
gagggggtagtgggggttgaagtaaaggaggagcaggaggaagaggaggttacaggggaa
aaagcagacacaaggcaagaggaggtagaggagaacagggagaaagaggaggaacatgga
ggtgagaaggaacaggctgaggagcaggtggaggaggagctgtctgagaaggaagagaca
atggacacagagaaaggattgacctcggaggacaaggaagagtcagggtcgagggcggtg
gaggaaagtgaggtcatgaaaaagaatgaaggtgaaacaaacaggaacactgtttcagaa
gacaagaaccagacaccgacaggagagaaaggagatccaaattaa
DBGET
integrated database retrieval system
