Oncorhynchus nerka (sockeye salmon): 115105119
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Entry
115105119 CDS
T07952
Name
(RefSeq) ribonuclease 3-like
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115105119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115105119
03009 Ribosome biogenesis [BR:
one03009
]
115105119
03036 Chromosome and associated proteins [BR:
one03036
]
115105119
Enzymes [BR:
one01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
115105119
Messenger RNA biogenesis [BR:
one03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
115105119
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
90S particles
RNase
115105119
Prokaryotic type
rRNA processing factors
115105119
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
115105119
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Cro
YcaO
Motif
Other DBs
NCBI-GeneID:
115105119
NCBI-ProteinID:
XP_029482614
LinkDB
All DBs
Position
LG22:complement(21180913..21321851)
Genome browser
AA seq
1384 aa
AA seq
DB search
MSFHQGRGGGGCPRGRAPPGQHGGQHGSHQNYRPTNLGPPPPQTPMPPYHYDPQAQHSSS
HSYGGQGNSGGGGYITAHSDYMSYPPPVPTQGGMTASPLSQCTPFPNPNTQSHPNFPPPP
LAGNTSGSSISGSPASAQSAYHYMMPSVPPPPFPHPPGMPPTMPPQSMSYHQPPYSMNYS
HPPFPPLPNFSPGNYGSHQSPSSFKPDHGGFRHSPHGGGGQQYKAEKQQQMDDRSQRSPE
RGRGGRHDDHRQQKGGYAYGSRGGGGGDRHKMDFPMNQRGKDRGRSPDRRRPEGGRHRSE
YEQRGRTPPTRHRSRERSRERHRHRDSRRSQSPDRHRKRPRSRSGSRERKRGRWEEERDR
RSDGPGMSRDRERSYTSARSRDTEPEREKGEGDEREEDELLKPAWIRCTHAENYYSSDPM
DQVGDSTVVGTSKLRDLYERFEEELVKRQERAQSARPKWDPPKTKLDEEPGTVLISDSIP
KEECHSHSSSESDCESDGGGSTCSSSSDSDVFDVIAEIKRKKAHPDRLHDELWYNDPGQM
NDGPLCKCSAKSRRTGIRHSIYPGEESVKECRPMNNNSGKLYHYRITVSPPTNFLTDRPT
VIEYDDHEYLFEGFSLFSHMPLTNIPLCRVIRFNIDYTIHFIEEMTPENYCVKGLELFSS
YLFQDILELYDWNLTGPEWDNQSPGCQKFHFMPRFVRFLPDGGKEVLSMHQVLLYLLRSS
KPLVPEEEIADMLQWEELKWQKYAEECKGMIVTNPGMKPSSVRIDQLDREQFNPEVITFP
IIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQIDKQKLTQREEALQKIRQ
KNTMRREVTVELSSQGFWKTGIRSDLCQHAMMLPVLTHHIRYHQCLKHLDDLIGYVFKER
CLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYMRKKGINTLINIMS
RLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLA
MLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEESKQLFGRLLFN
GEDLREVWLNYPPHPLQVQEPQTDRQLIETSPVLQKLTDFEDTIGVMFTHCRLLARAFTL
RTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKV
AEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLK
EFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIG
CGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRRERDRQEKEGDEPE
DSRK
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgtccttccatcagggtcgaggaggtggaggctgccccagaggaagagcccccccaggt
caacatgggggtcaacacggctcccaccaaaactaccggcccaccaacctaggaccccca
cccccccagacgccaatgcccccctaccactacgacccccaggcccagcacagctcctct
cacagctatggtggccaaggaaacagtggtgggggtggttacatcactgcacactcagac
tacatgtcatacccccctccagtgcccactcaggggggtatgacggccagtcccctcagc
cagtgcaccccctttcccaaccccaacacccagagccaccccaacttcccccctcctcct
ctcgccggcaacacctctggaagctccatatctgggtctccagcgtcagctcagagtgct
taccactacatgatgccctccgtaccccctccacccttccctcacccccccggcatgcct
cctaccatgcctccacagtccatgagctaccatcaacccccctactccatgaactactcc
catcctccattccctcctctgcccaactttagcccagggaactacggctcccaccagagt
cccagctccttcaagccagaccatgggggcttcaggcacagtcctcatggaggaggaggg
cagcagtataaggctgagaagcaacagcaaatggacgacaggagtcagaggtcgccggag
agaggcagagggggtcgccatgacgaccacaggcagcagaagggtggctatgcttacggc
agtcgtggtggtggtggtggcgacagacacaagatggacttccccatgaaccagagaggg
aaggacagaggcaggagtccggacagacgcaggccggagggagggagacatcggtcagag
tacgaacagcgtgggaggactcctcctacccgtcaccggagtcgagaacgcagcagggag
aggcatcgccacagagacagtcggaggtctcagtcacctgaccgacacaggaagcgacct
agaagtcggtcaggcagcagagagaggaagcgtggtcgctgggaggaggagagggaccgg
aggtccgacggaccggggatgagcagagacagagagcgcagctatacctccgccaggagc
cgagacacagagcctgaaagggagaaaggggagggagatgagagagaggaggatgagttg
ctgaagcctgcgtggatccgctgtacccatgctgagaactactactccagcgatcccatg
gatcaagtgggtgattctacggtggtggggaccagtaagctgagggacctgtacgaacgc
ttcgaggaagagctggtcaagagacaggagcgtgctcagtcggcccggcccaaatgggac
ccccccaagaccaagctagatgaggagcccggtactgtattgatatcagatagtatcccc
aaagaggagtgccacagtcacagcagcagtgagtcagactgcgagtctgacgggggaggc
agtacctgctccagcagctctgactctgacgtgtttgacgtgatcgctgagatcaagagg
aagaaggcccatccagaccgtctgcatgacgagctgtggtacaacgacccaggacagatg
aacgatgggccgttgtgtaagtgcagtgccaagtccagacgcacagggatacgccacagc
atctaccctggagaggagtcggtgaaggaatgtcgtccgatgaacaacaactctgggaag
ctctaccactacagaatcactgtgtctccacctactaacttcctgacagacaggcctaca
gttatcgagtacgatgaccatgagtacctgttcgaaggcttctccctcttctcccacatg
cctctcactaacattccattgtgcagagtgattcgtttcaacatagattataccattcac
tttattgaagagatgacaccagagaactactgtgtgaaaggactggagctgttctcttcc
tacctattccaggatatactggagctctatgactggaacctcacaggtccagagtgggac
aaccaatctcctggatgtcagaagttccacttcatgcctcgctttgtccgcttcttacct
gacggtggtaaggaggtgctctccatgcaccaggttctcctctacctcctgcggagctcc
aagcctctggtccctgaggaggagatagctgacatgctgcagtgggaggaactgaagtgg
cagaagtacgcagaggagtgcaagggcatgatcgtcaccaaccctggcatgaagcctagc
tctgtgcgtattgaccagctggacagagagcagttcaatccagaggtcatcaccttcccc
atcatcgtccacttcgggatccggcccgcccagctcagctacgctggagacccccagtac
cagaagctgtggaagagctatgtgaaactacgccacctgctggctaacagccccaaggtc
aagcagatagacaagcagaagctaacacagagggaggaagcccttcagaagatccgtcag
aagaacaccatgcgccgggaggtgaccgtggagctcagcagccagggcttctggaagact
ggcatccgctctgacctctgtcagcatgctatgatgttgccagtgttgacccaccacatc
cgctaccaccagtgtctgaagcacctggacgacctgattggctacgtcttcaaggagcgc
tgtctgttacagttggccatgactcaccccagccaccacctgaactttggcatgaacccg
gaccacgcccgtaactccctgtccaactgcggcatccgccagcccaagtatggggacaga
aaggtccaccacatgtacatgaggaagaagggaatcaacaccttgatcaacatcatgtct
cgtcttggacaagatgatccctccccctccaggatcaatcacaacgagcggctagagttt
ctcggcgacgccgtcgtggagtttctcaccagtgttcatctgtactacctgttccccagt
ctggaggaaggagggctcgccacctacagaacagccattgtacagaaccagcacctggcc
atgctagcaaagaaactggagttggatcgcttcatgctgtatgcccacggcccagacctc
tgtagggagtcagacctgagacatgccatggccaactgctttgaagcactcataggagcg
gtatatttggagggcggtctggaggagtctaagcagctgtttgggaggctgcttttcaac
ggagaggacctccgagaagtgtggctcaactacccgccccatcctctgcaggtgcaggag
ccgcagacggacaggcagctgatcgagacgtctccggtgcttcagaagctgacagacttt
gaggacaccatcggtgttatgttcacacactgtcgcctgctggccagagctttcacactg
aggaccgtgggcttcaaccacctcacactgggccacaaccagaggatggagttccttgga
gactccatcatgcagctggtggctacagagtacctcttcatccatttccccgaccaccat
gaaggacacttaacactgttgcgtagctccttggtcaacaaccgtacccaggccaaagtt
gcagaggagctgggcatgcaggagtttgctatcactaacgacaaaactaaacggccagtg
gccctccggaccaagacccttgctgacctgctggaatctttcatcgcggcgctctacatc
gataaggatctggagtacgttcacaccttcatgaacgtctgcttcttccctcgactgaag
gagtttatcctaaaccaggattggaacgatcctaaatcccagctccaacagtgctgcctg
accctgcgcacggagggcaaggagcccgacatacccctctacaagaccctgcagacagtg
gggccgtctcacgcgcgaacctacactgtggctgtgtacttcaaaggagagaggataggc
tgtggcaagggcccaagtatccaacaggcggagatgggagctgctatggacgcactcgag
aaatataacttccctcagatggctcatcagaagcgcttcatcgagcggaaataccgacag
gagctgaaagagatgagacgagagagggatcgccaggagaaggagggagacgagccagag
gacagcaggaagtaa
DBGET
integrated database retrieval system
