Oncorhynchus nerka (sockeye salmon): 115105176
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Entry
115105176 CDS
T07952
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04140
Autophagy - animal
one04148
Efferocytosis
one05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115105176
04148 Efferocytosis
115105176
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115105176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115105176
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
115105176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_Prp19
zf_RING_Vps8_fungal
Beta-prop_HPS5
Vps39_1
TPR_7
Beta-prop_EML_2
zf_RING_Vps8
Beta-prop_RIG_2nd
WD40_WDHD1_1st
TPR_GEMI5
Helicase_PWI
Beta-prop_IFT140_2nd
zf-C3H2C3
zf-rbx1
zf-Vps39_C
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
115105176
NCBI-ProteinID:
XP_029482727
LinkDB
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Position
LG22:complement(26286854..26315836)
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AA seq
853 aa
AA seq
DB search
MAEVEKGRKPSEESTDDSEEEDSEEEPKLKYERLANGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNLTQKFEISPVKINQISLDESGEHMGICSEDGKVQVFGLYTREGFHE
NFDCPVKVVALHPRFSSSNYKQFVTGGNKLLLYEKNWLNRWKTSTLHEGEGTITNVQWRA
NLIAWANNMGVKIYDISTKQRITNVLRDNVSLRPDMYPCSLCWKDNSTLIIGWGSSIKIC
VVKERGHTELRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDHMEEEFRAR
PCLDIIQPLPEGYEEISSDALTVRNFQENECRDYRLEHSEGESLYYIISPKDIVVAKERD
QDDHIDWLLDKKKYEEALMAAEISFKNIKRHEVQKIGMAYINHLVEKGDYDTAARKCQKV
LGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKSDYEGFATLIR
EWPGELYNNMTIVQAVTDHLKKDPMNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHDLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKILIDRVVEELRDRPELLHIYLHKL
FKRDHHKGQRYHERQIGLYAEYDRPNLLPFLRDSIHCPLEKALEICQERSFVEETVFLLS
RMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQMR
GVRVDEENICESCHASILPSDMAQNFSVVVFHCRHMFHKECLPSPGTIPGVQFCNICSAK
RRGPGSGILEMKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtagagaagggaagaaaaccaagtgaagaatccacagatgactctgaggaa
gaggacagcgaggaggagcctaagctgaagtatgagcgactggccaatggggtgactgag
attctccaaaaggatgctgccagctgtatgactgtccatgataagttccttgcactgggc
actcactttgggaaggttttccttctggacatccaaggaaatctgactcagaagtttgaa
attagtccagtgaagatcaaccagatcagtctggatgagagtggagagcatatggggatc
tgctctgaggacggcaaggttcaagtgtttggactctacacgagggagggcttccatgag
aactttgactgtcctgtcaaagtggtggcgttacaccctcggttcagcagttcaaactac
aaacaatttgtcaccggaggcaacaagctgctgctgtacgagaagaactggctgaaccgc
tggaagacgtccactctgcacgagggggagggcaccatcactaacgtccaatggagggcc
aatctcattgcctgggccaacaatatgggggtgaagatttatgacatcagcaccaaacag
cgaatcaccaacgtcctgcgggataacgtcagcctgcggcctgatatgtacccctgcagt
ctgtgctggaaagacaactccaccctcatcatcggttggggctcctctattaagatctgt
gttgtgaaggagaggggccacacagagttgagagaccttcctagccgttatgtggaaatt
gtgtctgcgtttgaaacggagttcttcatcagtggcctggcgcctctagcagaccagctg
gtcaccctgtactttgtgaaggagaactctgatcacatggaggaggagttccgagcgcgg
ccttgtctggacatcatccagcctcttccagagggctatgaggaaatctcatcagatgcc
ctgaccgtccgcaacttccaggagaacgagtgtcgagactaccgactggaacattccgag
ggagaatccctctactacatcatcagccctaaagacattgtggtggccaaagagagagac
caagatgaccacattgactggctgctggacaagaagaagtatgaggaagctctgatggct
gccgagatcagcttcaagaacattaaacgccatgaagtccagaaaattgggatggcctac
atcaatcacctggtggagaaaggtgactatgacaccgctgccaggaagtgtcagaaggtg
ctgggaaaaaacatggaactctgggagaatgaggtgtacaggtttaaaaccattgggcag
ttgaaggccatcagtcagtacttgcctagaggggacctgcgtctcagacctgccatctat
gagatgatcttacacgagtttctaaagtcagactatgagggctttgccaccttgatccgt
gagtggccaggagagctctacaataacatgaccattgttcaggcagtcaccgaccacctc
aagaaggaccccatgaacagcaccttgctcaccacactggctgaactgtatacatatgac
cagcggtatgaccgagccctggagatctacctgagactgaggcataaagatgtttaccag
ctgatccacaaacacgacctcttctcctccatagaagacaagattgtgctcctcatggac
tttgataaagagaaagctgtcgacatgctcctggataacgaagacaaaatattgattgac
agagtggtggaggaactcagggacaggcctgagctgctacacatttatctccacaaacta
ttcaagagggaccaccacaagggtcagcggtaccatgagagacaaattggcctatatgct
gaatacgatcggcccaacctactgccattcctgagagacagcatccactgcccactagaa
aaggctctggaaatttgtcaggagagaagctttgtggaggaaactgtcttcctgctcagc
agaatggggaactgtagacgggctcttcagatgatcatggaggaactggaggatgtggac
aaggccatagagtttgccaaggagcaggatgacgctgagctgtgggaggatctcatctcg
tattccatcgataagccacccttcattactggtctcctcaataacattgggacacatgtg
gatcccattttactcatccaccgcataaaggagggcatggagattcctaacctcagagac
tcactggtcaagatcctccaagactacaacctgcagatcttgctccgggagggttgtaag
aagatcttggtggctgactcgctgtcactgctccagaagatgcataggactcagatgaga
ggggtcagggtggatgaagagaacatctgtgaatcctgtcacgcttcaatattaccatca
gatatggcccagaacttcagtgtggtggtcttccactgcagacacatgttccacaaggag
tgtttaccttctcctggaacgattcctggggtccagttttgcaacatctgcagtgcgaag
cggagagggccaggaagtggaatactggagatgaagaagtaa
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