Oncorhynchus nerka (sockeye salmon): 115105243
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Entry
115105243 CDS
T07952
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03440
Homologous recombination
one03450
Non-homologous end-joining
one04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115105243 (rad50)
03450 Non-homologous end-joining
115105243 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
115105243 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
one03032
]
115105243 (rad50)
03400 DNA repair and recombination proteins [BR:
one03400
]
115105243 (rad50)
DNA replication proteins [BR:
one03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
115105243 (rad50)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
115105243 (rad50)
BRCA1-C complex
115105243 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
115105243 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad50_zn_hook
SMC_N
AAA_21
AAA_23
SbcC_Walker_B
ABC_tran
AAA_29
AAA_22
AAA_13
Motif
Other DBs
NCBI-GeneID:
115105243
NCBI-ProteinID:
XP_029482881
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All DBs
Position
LG22:30419098..30459265
Genome browser
AA seq
1313 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQIISFLNPLTVLVGPNGAGKTTIIECLKYVTAGEFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFTDLNGEKVAVQRSMQATQKGKKTEFRSLEGVITR
IKHGEKVSLSSKCAELDREMISALGVSKAVLDHVIFCHQEESNWPLGEGKPLKNKFDAIF
SATRYIKVLETLRQLRLKQSNEVRECQVELKFLKLNKEKALEIRELLASKETQLASSKDA
VQKIEGQIEPLENRLVDIDENLGKVMKLDNDIKALDSRKKQMEEDNQELEEKMEQVFQGS
DEQLQEMYQNHQRTVKEKEKRFTECQREMERAGRECQRLNRLQSDLLVEQGRLQLEADRH
AQNMKARDSQVRALAAYLEMEGYDRSPFNDRQLQSFNRQVKERLDQETEAANQVMRDIQE
KEAMKQQSIDEIRDKKTGLERTMELKKDLQVKKQHELRNVKSDLQRLEGSSSRLQELETE
LTKAERELESAVQSSNVDGLKAEVLELQKDKAELDRTQRRLDREMETLNTHTTTRTQMDM
LKKDKTDKEDQVRKIKSRHSEDLVSLLGHFPKKRELEDWIHAKSKEINSTREKLAKLNKE
LASGEQNKSHITAEIRRKEQQLASYEEKMFNVCGSQDFQQDLGKLQDDLEKTSKQRAMLA
GATAVYTQFISQLTEEGEPCCPVCQRIFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERRKDDMMALKPVRQSIAELQEKELPELRNRLQNVNRDIERLKGDVEEQETLLSTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQQAAKLQGVDLSRTIQQVNQEKQETQHRLD
TTSSKMELKRKLIQDQQEQIQSLKSSMNETRAEKLQISSNMQKQQQLEEQCVEFTTEIQA
LHREIKEAKEQVSPLATTLEKLQQERLDLMERRKQRQEEGQEKINSIKDKVKSMAAFERE
IIGYTEEGKDDYKEQKEGELRETNTQVHEAEKQREKINKDSGNIRQDIDTQKVQERWLQD
NLTLRKRIEELKDVTKKREAVAKDMGNMQVLQLRNERRESEQRVDDLKKNRSVALGRQKG
FEEEIIRFRKELREDQYGKADERFRDRMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSGAGVKRRTYNYRVVMVKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSNYVEHFYRIRKNMDQCSEITKCSVSSLTSYLH
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaattgagaagatgagcatcctcggtgtgaggagctttggagtggaagacaag
gacaaacaaatcatatcattcttgaatcccttgactgtgttagtgggacccaatggtgct
ggtaaaacgactatcattgagtgtctgaagtatgtaacagctggtgaatttcccccagga
agcaaagggaatacatttgttcatgatccaaaggatgctcatgagactgacgtgcgagct
cagatccgactgcagttcaccgatctaaatggagagaaggtggcagttcaaaggtccatg
caggcaacacagaagggcaagaagactgagttcagaagtctggagggggtcatcaccagg
atcaagcatggagagaaggtgagcctgagctccaaatgtgcagagctggacagagagatg
atctcagccctgggtgtgtctaaagctgtcctcgaccatgtcatcttttgtcaccaagag
gagtccaactggcccctgggagaagggaagcccctcaagaacaaatttgatgccatcttc
tcagccacaaggtacatcaaggtgctggagacgctgaggcagctgaggctcaagcagtct
aacgaggtgagagagtgccaggtggagctgaagttcctgaagctgaacaaggagaaagcc
ctcgagatcagggagctgcttgccagcaaggagacccagctggcctcctccaaagatgct
gtacagaagatagagggccagatcgaacccctggagaaccgactggttgacattgatgag
aatctggggaaagtgatgaaactcgacaacgacatcaaggctttagacagcaggaagaag
cagatggaggaagacaaccaggaactggaggagaaaatggagcaggtgttccagggctca
gatgagcagctgcaggagatgtaccaaaatcaccagaggacagtgaaggagaaggagaag
aggtttacagagtgccagagggagatggaacgagccgggagagagtgccagagactcaac
cgcctccagtccgaccttctagttgaacaaggtcgtctccagctggaggctgatcgccat
gcccagaacatgaaggcccgtgactcccaggtgagagccctggcagcctatctggagatg
gagggctacgaccgttcccccttcaatgacagacagctgcagagcttcaaccgccaggtc
aaagaaagactcgaccaggagactgaggccgccaaccaggtcatgagggatatacaagag
aaggaggccatgaagcagcagagcattgatgagatacgagacaaaaagactggtctggag
aggaccatggagctgaagaaagacctgcaggttaagaagcagcatgagctgaggaacgtc
aagtctgacctacagagactggagggctcctcctcccggctgcaggaactggagacggag
ctcaccaaagcggagcgtgagctggagagcgcggtgcagagctccaatgtggatgggctg
aaggccgaggtgctggagctccagaaggacaaagctgagctggaccgcacacagcgtcgg
ctggaccgtgaaatggagacccttaacacacacaccaccacacgcacacagatggacatg
ctcaagaaggataagacagataaagaagatcaggtgaggaagatcaagtcaaggcacagt
gaggatctggtgtccctgctgggtcacttccctaagaagagggagctggaggactggatc
cacgccaagtccaaagagatcaactccaccagggagaaactagccaagctcaataaggag
ctggcgtcaggggagcagaacaagagccacatcacagcagagatcaggaggaaggagcag
cagctggccagctatgaggagaaaatgttcaatgtgtgtggcagtcaggacttccagcag
gacctgggcaagctgcaggatgacctggagaagacttccaagcagagagccatgctggcg
ggagccacagccgtgtacactcagttcatcagtcagctgacagaggagggcgagccctgt
tgccccgtgtgccagcgcatcttcccctcggaggctgagctccaggacgtcatcaacgac
atgcagtccaagctgcgcctggtccctgacaagctgaagaacaccgagcaggatctgaag
aggaaagagaggaggaaggacgacatgatggccctcaaacctgtcaggcagtctattgct
gagctgcaggagaaggagcttcctgagctgaggaaccggctgcagaacgtgaaccgggac
attgagaggctgaagggggatgtggaggagcaggagaccctgctgtccactctgatgtca
gaggaggacacagccaaggcctgcctgcaggacatctccctcatggacagataccagctg
gacctgaaggatgtggagaggaagatagcccagcaagctgccaagctgcagggagtggac
ctgagtcgcaccattcagcaggtcaaccaggagaaacaggagacccagcatcgcctggac
acaacatccagcaagatggagctgaagcgtaaactgatccaggaccagcaggagcagatc
cagagcctgaagagcagcatgaacgagacccgggcggagaagctgcagatctccagtaac
atgcagaagcagcagcagctggaggagcagtgtgtggagttcaccactgagattcaggct
ctgcacagagagatcaaggaagctaaggagcaggtgtcccctctggccaccaccctggag
aagctgcagcaggagaggctggatttgatggagcgcaggaagcagaggcaggaggaggga
caagagaagataaatagcatcaaagacaaagttaaaagcatggccgcctttgaaagagag
attatcggatacacagaagagggcaaggatgattacaaagagcaaaaagagggggagctc
cgagagaccaacactcaggtccatgaggcagagaagcaacgggaaaagattaacaaagac
agtggaaacatcaggcaagacatagacactcagaaggtccaagagcgttggctgcaggac
aacctgacgttgaggaagcgcatcgaggagctgaaggacgtgaccaagaaacgagaggct
gtggcgaaggatatggggaacatgcaggtcctgcagctacgcaatgagcgcagggagtct
gagcagcgcgtggacgacctgaagaagaaccgcagcgtagcattgggccgacagaaaggc
ttcgaggaggagatcatccgcttccgcaaggagctccgcgaggaccagtacggcaaggct
gacgaacgctttcgggacaggatgattgtcatgaggaccacagagctggccaacaaggac
ctggacatctactacaaggccctggaccaaaccataatgaagtttcacagtatgaagatg
gaggagatcaacaaaatcatccgggacctctggcgcagcacataccgaggacaagacatt
gagtatgtggagatccgctctgatgtggatgagaattcttccggggcgggagtgaagagg
aggacctataactaccgtgtggtgatggtgaagggagacacggcgctggacatgaggggt
cgctgcagtgccggccagaaggtcctggcctccctcatcatccgtctggctctggctgag
accttctgtctgaactgtggcatcctggccctggacgagcccacaaccaacctagacagg
gagaacatcgagtccctcgcacacgcccttgtggaaatcatcaagagccgctcacgccag
cgcaacttccagctgctcatcatcacccatgacgaggactttgtggagctcctggggcgc
tccaactacgtggaacacttctaccgtatcaggaagaacatggaccagtgctctgagatc
accaagtgcagtgtctcctccctcacctcctacctgcactga
DBGET
integrated database retrieval system
