Oncorhynchus nerka (sockeye salmon): 115105290
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Entry
115105290 CDS
T07952
Name
(RefSeq) protein transport protein Sec24A-like isoform X1
KO
K14007
protein transport protein SEC24
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115105290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115105290
Membrane trafficking [BR:
one04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
115105290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Sen15
Motif
Other DBs
NCBI-GeneID:
115105290
NCBI-ProteinID:
XP_029482989
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All DBs
Position
LG22:34400660..34425404
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AA seq
1134 aa
AA seq
DB search
MSSTDFSSQNGAGGPPYANGPSQNPVALQPPGPGYMAHQTPYNPMQAKGPMPPGPGIYNS
GPYQPIPPVSSNQALPSQPMLKRPPMGPQHSMTPPQSASPNPGSRIPPAHATPPPVSANN
YQHAPAWQYGGTLPMGAPPSMGAPPPMAMPPLRPVGNHMTSSPSLATPQASSAEYRATPP
VFHNAMQPLGPPTSLQGYTQQGSAPLLMNPMAAPHSYQPGMRAPYGGPPPSVRPTPPTTG
PPMGNATPPLGPKTDAQCGSDASDASHTEYENQENDFECPGHMPTPGNGAQVPNSFDHLE
MGPKMAGPLPPQQPGPPTRQMGLSYPSLPPGYQNTSAPPTAATMQHPVQPSTQPYSHPQP
YQQPSAGPAQLSPSLSGLSLQSQTPEALRVVNLLQERNLLPLGPVTPPTPCLPQDLQKIN
CHPEVFRSTLTSIPQTQSLLNKAKLPLGLLLHPFKDLSQLPVVTSSTIVRCRSCRTYINP
FVTFLDQRRWKCNLCYRVNDVPEEFMYNPVSRSYGEPHKRPEVQNATLEFIAPSEYMLRP
PQPAVYLIVLDVSHNAVETGYLDVVCQSLLENINALPGDSRTKIGFITFDSTIHFYNLQE
GLSQPQMLIVTDIEDIFLPTPDSLLVNLNECKELVQDLLRSLPQMFGKTMETQCALGPAL
QAAFKLLSATGGRVSVFQTQLPSLGVGALKSREDPNQRASAKDIQHLSPATDFYKKLALD
CSGQQVAVDLFLLSSQYCDLASLGCISRYSAGSVYYYPSYHQQHNPAGVECFQKDLKRYL
TRKIGFEAVMRIRCSKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGFAVQMSIEENLVDMQ
SVSFQAALLYTSSKGERRIRVHTMCLPVVNSLSDIFAGADVQAITCLLASMAVDRSVTAS
LSDARDAMTNASIDSLTSFRTSVLTIQQPGLLAPACLRLFPLYILALLKQKAFRTGTSTR
LDDRVFAMCQLKYQPLAYVMLMIHPALYRVDDLTDEGALNVSERTIPQPRVQQLSVEKLS
RDGAFLMDAGSVIYLWIGRNCNPNFLTQVLGLPNYAAVPLNMNMLPELDTAESQRTRAFV
GWLREQRPFFPILHVIRDESPLKASFLQNMIEDRTESALSYYEFLLHIQQQVSK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtacagattttagttctcagaatggggcaggaggaccgccctacgcaaatggt
ccctctcagaatccagtagcgctgcagccaccgggaccgggttacatggcccaccagact
ccatacaacccaatgcaagccaagggccctatgccgcccggccctggaatctataactcc
ggtccctaccagcccatcccaccagtcagctctaaccaggcccttccaagtcaacccatg
ttaaaaaggcctcctatgggacctcaacattccatgaccccacctcagtctgccagccct
aacccaggctccaggattcccccagcgcatgccacccctccacctgtgtctgctaacaac
taccagcacgccccagcctggcagtatggggggactctaccgatgggagctcctccatca
atgggggcaccgcctcctatggccatgcctccccttcggcctgtgggtaatcacatgacc
tcctcgcccagcctggccaccccccaggcctcctcggcagagtaccgcgcaacgcctcct
gtcttccataatgccatgcaacccctgggtcctcccacctcgctccagggatacacccag
caaggctctgcccctcttctgatgaaccccatggcggctcctcactcataccagccaggt
atgagagcaccttacggcggccccccaccctctgtgagacccaccccacccactactgga
ccccccatgggcaatgccacccctccccttggccccaaaactgatgctcagtgtgggagt
gatgctagtgatgcttcccacactgagtacgagaaccaggagaatgactttgagtgtcca
ggacacatgcccacacctggtaatggtgctcaagttcccaacagctttgatcacttggag
atgggccctaaaatggctggcccacttccaccccagcagccaggcccccctactcgacaa
atgggtctatcctacccctctttacccccggggtaccagaacacctcggcaccccctact
gccgccaccatgcaacatcccgtgcagccctcgacgcagccttacagccatcctcagcca
taccagcagccctctgcaggtccagcccaactgagcccctccttgtctggtttgagtctg
cagtctcagaccccagaggccctgagggttgtcaacctgctgcaggagaggaacctgctc
cctctgggcccagtcacccctcctacgccctgcctgccccaggacctgcagaaaatcaac
tgccacccagaggtcttccgcagtaccctgaccagcatcccccagacccagtcgctgtta
aacaaagccaagctcccactcggcttgctcctccaccccttcaaagatctctcgcaactg
cctgtggtcacctccagcactatagtgaggtgtcgctcctgcaggacgtacatcaacccc
tttgtgaccttcctggaccagaggagatggaagtgtaacctgtgttaccgggtcaacgac
gttccagaggagttcatgtacaacccagtcagcagatcatatggcgagccacacaaaaga
cctgaggtccagaatgctaccctcgagttcattgcaccatcagaatacatgctgagaccc
ccccagcctgctgtttacctcatcgtgctggatgtatcccacaatgccgtggaaacagga
tacctagatgtcgtctgtcagtcactgctagagaacatcaatgcgctccctggggactcg
aggacaaagattggcttcatcacatttgacagcaccatccacttctacaacctccaggag
ggcctgtcccaaccacagatgctcatagtcaccgacatcgaagatatatttttaccgaca
ccagacagccttttagtgaacctcaatgaatgcaaggagctggtgcaggatttgctgagg
agcttgccccagatgtttggcaagaccatggagacccagtgtgctctgggcccggccctg
caggcagcgttcaagctgctatcggccaccggagggcgtgtgtccgtcttccagacccag
ctgcccagtctgggtgtgggggccctcaagtccagagaggaccccaaccagagggcttct
gccaaggatatccagcacctttctcctgccacagacttctataagaagctggccctggac
tgttcaggacagcaggtggctgtggatctgttcctactgagctcccagtactgtgacctg
gcctctttaggttgcatatccaggtactcagcgggaagtgtgtactactacccctcctac
caccagcagcacaatccagccggagtagagtgcttccagaaggatctcaagaggtacctc
acccgcaagatcggcttcgaggctgtcatgaggatacgctgctctaaaggcttgtccatc
cacacgttccatgggaacttctttgtgcgctccacggacctgctgtctctgcccaacgtg
aacccggatgcaggcttcgctgtgcagatgtccattgaagagaacctggtggacatgcag
tctgtctccttccaggctgctttgctctacacgtccagcaaaggagagcgacgaatccga
gtccacaccatgtgtttgcctgttgtcaactccctatccgacatcttcgctggggctgat
gtccaggccatcacttgcctgctggctagcatggctgtggatcgctctgtgacggccagt
ttgagtgacgccagggacgcgatgaccaacgcatccatcgactctctgacgtccttccgc
acctctgtactcaccatccagcagcctggcctcctggcccccgcctgcctcagactgttc
cccctctacatcctcgccctgctcaaacagaaagccttccgaacgggtacaagcaccagg
ctggatgaccgtgtgtttgccatgtgtcagctgaagtaccagcccctggcctacgtcatg
ctgatgatccacccagcgctgtaccgtgtggacgatctgactgacgagggagccctgaat
gtcagtgagcgcaccatcccccagcccagagtccagcagttgtctgtggagaagctgagc
agagatggggccttcctcatggacgctggctcggtgatctatctctggattggaagaaac
tgcaaccccaacttcctcacgcaagtcctggggctcccaaactacgctgctgtgcccctg
aacatgaacatgctcccagagttggacactgcagagtctcagagaaccagagcgttcgtt
ggctggttgagggaacagaggcccttcttccccatcctgcatgtcatcagggatgagagt
ccactgaaagccagcttcttgcagaacatgatagaggaccggacagagtcggccttgtct
tactatgagtttttactccacatccaacagcaagtctccaagtaa
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