Oncorhynchus nerka (sockeye salmon): 115105467
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Entry
115105467 CDS
T07952
Symbol
nup88
Name
(RefSeq) nuclear pore complex protein Nup88
KO
K14318
nuclear pore complex protein Nup88
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115105467 (nup88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115105467 (nup88)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115105467 (nup88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
Motif
Other DBs
NCBI-GeneID:
115105467
NCBI-ProteinID:
XP_029483418
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Position
LG22:48564777..48581316
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AA seq
720 aa
AA seq
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MAAFSGERWRSELPSHYIFFKLREKLDLEPKANCRKTAKNLTFCLNGDIFVWNDADSVFY
TTNLRQLNSEDSIESVKYQTLLCINPPRFEVCQVLLSPTQYHVALIGQRGVTVLELPQRW
GKRSEFEGGRSEVNCKTIPVAERFFTSSASVTLRQAAWFPSETEEPHLVLLTSDNTIRFY
GLKEPQTPARALSVSQSEEDSSVHTRGRSYAASLGEIAVAFDFGPVAGAPQQLTGQRSKE
DVLVYPLYILYENGETYLSYTSLAHSLGSLSKPIGPLPMYPAAEDNYGYDACAVLCLPCV
PNILVIATETGTLYHCVVLEAEEEEETGAVERWLRGSEAVPSLYVFECVELELTLKLPAG
EEEEPVESDFTCPIRLHRDPLCQHRYHCTHEAGVHSVGLTWFNKLHKFLQSDEDKDSLQE
LAAEHRCIVEHILCTRPLSSSLSAPVRGFLIVSDLSLGATMICITSTYECLLLPLLSSIR
PPSPPLLCSHPGVGSASSPLRGLHDDSFEQHIRNILARSSTNPLMLRAGDKDTSSPPPEC
LQLLSRATQVFREEYILKQDIAREEMQRRVKLLTGQKNKQLEDLALCREERKSLRESAEL
LADKYEDAKYRQEATMNRVKQVLGSLRSQLPVLSDSEKDMKKELQTINDQLRHLDNGIKQ
VNVKKEYQKKQMDKGLSPARATVALNPHQRKCVQGVIKEQGEHIGEMMKQIKDIKNHFSV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttttctggcgagcgatggagaagcgagctaccaagtcattatatatttttt
aaattacgagagaaacttgatttggaacccaaagcgaattgcaggaaaactgcaaagaat
ctgacattttgcctcaatggtgacatattcgtgtggaacgacgcagacagtgttttttac
acgaccaacctgaggcagctgaattcggaggacagcattgagagtgtgaaatatcagact
ctgttgtgcatcaatccaccacggtttgaagtgtgccaggtgttgctgagcccgacacag
taccatgttgcactcattggacaacggggtgtcaccgttctagaattaccacagcggtgg
ggcaagaggtccgagtttgaaggaggacggagtgaagttaactgcaagactattcctgtg
gctgagcgtttcttcaccagctcagcctccgtgaccctgcggcaggccgcctggttcccc
agtgagacggaggagccccacctagtgctactgacctctgacaacaccatcaggttctac
gggttgaaagagcctcagactcccgctagagcactatcagtttcccagtcagaggaggac
agcagtgtacacactcgtgggcgctcctatgcagcctctctgggcgagatcgctgtggct
tttgactttgggccagtggccggcgcccctcaacagctcacaggccagcggtccaaggag
gatgtgctggtgtaccccctctacatcctctacgagaacggagagacctatctgagttac
accagcctcgcacacagtttgggaagcctcagtaagcccattgggcccttacccatgtac
cccgcggcggaggataactatggttatgacgcctgtgccgtgctctgcctgccctgtgtt
cccaatatcctggtcatcgccacagaaacaggcacactgtaccattgcgtggtgctggaa
gcagaggaggaggaggagactggagcagtggagcggtggttgcggggctctgaggcagtg
ccctctctctacgtgtttgagtgtgtggagctggagctcaccctgaaactgcccgcaggg
gaggaggaagagcctgtggagtccgacttcacttgcccaatccgactgcacagagacccc
ctgtgccagcacagataccactgcacacatgaggcaggagtgcacagtgtaggcctcact
tggttcaacaaactacacaagttcctccagtcagatgaggacaaggatagtctccaggag
ctggctgctgagcaccgctgcatcgtagagcacattctctgtaccaggcctctaagtagc
agcttatcagctccagtacggggcttcttgatcgtgtcagacctgtctttgggtgcaacc
atgatctgcattaccagcacctatgagtgtctactactgcctctcctgagttccattcgg
cctccctctcctcccctgctgtgttcccacccgggggtaggctcagctagctctcctctg
cgtggattgcatgacgactcctttgagcagcacatccgcaacatcctggcccggagctcc
accaaccctctcatgctcagggcaggggacaaggacacatcgtctcctcctccagagtgt
ctccagctgctgagcagagccacccaggttttcagggaggagtacatcctcaaacaggac
attgcccgtgaggagatgcaaagaagggtgaaactgctgaccggacagaagaacaagcag
ctggaggacctagccctgtgccgagaggaaaggaaaagtctgcgagagtctgcagagctt
ctggctgataagtacgaggatgccaagtatcgccaggaagccaccatgaacagggtgaag
caggttctgggcagtctgcgcagtcagctgcccgttctgtctgacagcgagaaggacatg
aagaaagagctgcagaccatcaacgaccagctgcgtcacctggacaatggcattaaacaa
gtaaatgtgaagaaggagtaccagaagaaacagatggacaaagggctgtctccagccaga
gctactgtcgccctcaacccccaccagaggaagtgtgtccagggagtgataaaggaacag
ggagagcacataggagaaatgatgaaacagatcaaggacatcaagaaccatttcagtgtc
tga
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