Oncorhynchus nerka (sockeye salmon): 115105482
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Entry
115105482 CDS
T07952
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04137
Mitophagy - animal
one04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
115105482 (rabgef1)
04137 Mitophagy - animal
115105482 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115105482 (rabgef1)
Membrane trafficking [BR:
one04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
115105482 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
115105482 (rabgef1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
CTXL_M
Tautomerase_3
DNA_pack_N
DUF2336
CID_GANP
Motif
Other DBs
NCBI-GeneID:
115105482
NCBI-ProteinID:
XP_029483442
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All DBs
Position
LG22:complement(49209613..49244406)
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AA seq
540 aa
AA seq
DB search
MSQRKERRGIHVDQSELHCNKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQEDWALAEK
LQREEEVAYASIQGAQPQAQPQASVAPFSKFEEKKTNEKTRKVTTVKKFFSPSSRTAPKK
APTVGEEKLTGLRDWRGMFTPPWEMGSPTEALVARLRENQEGKTPSPSISRQSSIETDRV
SRDFVDFLKTLHKPGREVHKQSRAFIEIMANKKDLSADELSECVQDFYQNLSDRLMTHFK
GSSERVERVMDEVEKYIMTRLYKSVFCPETTDDEEKDLATQNRIRALHWVDIQMLCVPVD
EEIPEVSDNVVKAITDVIEMDSKRVPRDKLACITRCSKHIFSAIKITKSEPASADDFLPT
LIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLDP
EDFERYMSGQASPRRPEADSGWPQVDPPTGSAASSPALSQVYQNLDLLSGLGSRQDRVLE
GVQSLQRDLITWQESVEREVQEILEKYPLEIRLPTPSAIDSDNVENDRLPPPLTPQVFAG
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggaaggagcgccgcgggatccacgtggaccagtcagagctgcactgcaac
aagggctgcggttactatggcaatgccgcctggcagggcctgtgctccaagtgctggcgg
gaggagtaccagcgggcccggcagaagcagatccaggaggactgggccctagctgagaag
ctgcagagggaggaggaggttgcctatgccagcatccagggggcccagccccaggcacaa
ccccaggcctctgtggcgcccttctccaagttcgaggagaagaagaccaatgagaagaca
cgcaaggtgaccactgtgaagaagttctttagtccctcgtcacggacagcccccaagaaa
gcccccactgtgggagaggagaagctgacaggcctcagggactggagaggaatgtttact
cccccttgggaaatgggctctcccaccgaagcactggtggcaagactcagagagaaccag
gagggcaagacccccagcccctccatcagccgccaatcaagcattgagacagaccgtgtc
tccagagactttgtggacttcctgaagaccctgcataagcctggccgtgaggtccacaag
cagagccgagccttcatcgaaatcatggccaacaaaaaggacttgagtgctgacgagctg
tcagagtgtgtccaagacttctaccagaatttgtctgaccgcctcatgactcattttaaa
ggctcttcagagcgggtggagcgagtgatggacgaggtggagaagtacattatgacacgc
ctgtataagagtgtcttctgccccgagaccacagacgatgaggagaaagacctggccact
cagaaccggatacgggcgttacactgggtggacattcagatgctttgtgtgccagtggat
gaggagatcccagaggtttcagacaacgtggtcaaagccataacagatgtcatcgagatg
gactccaagcgggtaccccgggacaagctagcgtgcatcacgcgctgcagcaagcacatc
ttcagcgccatcaagatcacgaagagcgagccagcctcggccgacgacttcctgcccacc
ctgatctacatcgtgctgaaggccaaccctccacgcctgcaatccaacatccagtacatc
acccgcttctgcaaccccagcaggctcatgactggagaggacggatactacttcactaac
ctgtgctgtgcagttgccttcatcgagaaactggacgcccagtctctcaacttggaccca
gaggactttgagcgctacatgtcgggccaggcctctcctcgcaggcctgaggcagacagc
ggctggccccaggtggaccctcctactggttctgccgcctccagtcccgccctatcccag
gtctaccagaacctggacctcctgtctggcctggggagcagacaagacagggttctggag
ggggtgcagagcctgcagagagacctgatcacctggcaggagagtgtggagcgagaggtg
caggagatcctggagaagtacccgctggagatccgcctgcccaccccctccgccattgac
tcagacaacgtggaaaacgaccggctgccaccaccactgacaccccaggtgtttgctggg
taa
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