Oncorhynchus nerka (sockeye salmon): 115105629
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Entry
115105629 CDS
T07952
Name
(RefSeq) la-related protein 4-like isoform X1
KO
K18763
la-related protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115105629
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
115105629
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_LARP4
La
RRM_fung
HP0268
Motif
Other DBs
NCBI-GeneID:
115105629
NCBI-ProteinID:
XP_029483722
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Position
LG22:complement(57126557..57140845)
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AA seq
811 aa
AA seq
DB search
MSSDQGGEPRLLQEEADPGPKTCGEQETPLGIGGGSGGMVTSKGAGLNPNAKVWQAPADG
PDGAQWPPADITEGYSESVPSTGCKPYRVGFTTLEDSSSSAAATAEITVNGMDPPDLAFT
PAETTTGTLGETKLTEEQPLSSENLTESLKKELEFYFSRENLSKDLYLMSQMDSDQFVPI
WTIASMESIKALTTDMELILDVLRSSPMVQVDEQGEKVRPDHKRCIIILREVPETTPVEE
VEALFKSDDCPKVISVEFAHNNNWYITFQSDTDAQQAHRYLREEVKTFQGKPIMARIKAI
NTFFAKNGYRSMDSSLYTAQQSAPTQTQYNPNLYMQHVYSPQQQYPLYGIVPQTWTTSPT
PYFETPLAPFPNSGFVNGFSSPGHYKTGNNSLHITRPFNRNRNHVKPQVGRPGEVTPTSV
APVPLESLTGLRSPQPPTTNPGPLQTPPDPTSTFPHLSSTSSDPNDDGSMSVRGRRTTYR
GTRRRREDERITRPVPLAEVKVAPPKFDLATTSFPPLPGCVASTQGEPLLENRMSDVVRG
LNRDKTTELANKEVSAGPASAPGHEEVVSVSSLVQPTAKLAVHPQAPPAPVPAPSVPHQE
KKWDRVAEPSAPKVTPHRRAISGANPTGPPSTQPAVSGPKPQARTVSSTPVTPSTLASTT
TTTTTNAPLEPRKLSYAEVCQRAPPPGPPASASSTPTQPLREQRVNKAEEPGSSSTTSPD
DHTRGDRQDKAQERDGGWECKESRPRDRDHRDRDSRDGRYYRNNGPPRQGGSGGLKFHEQ
RRGPQLARRSSPQGCPRHTGKEQNIPPVSPK
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgagttcggaccagggcggagagccgcggctgctgcaggaggaggctgatccggggccg
aagacctgtggggagcaagagacaccacttgggatcgggggaggatcaggcggcatggtc
acctccaagggcgcaggtctgaaccccaatgccaaggtgtggcaggctcctgccgatggc
cccgacggagcacagtggcccccggctgacatcactgaaggttattctgagtctgtgccc
tccaccggttgtaaaccgtacagggtaggcttcaccaccctggaggacagcagctcctcc
gcagcagccacagctgagatcactgtgaacggcatggatcctccagacctggcctttacc
cctgctgagactacaactgggaccttgggggagaccaagctgacagaggaacagcccctc
tcgtcagagaacctgacagagtccctcaagaaagagctggagttctacttctctcgggag
aacctgtccaaggacctatacctgatgtcccagatggacagtgaccagtttgtccccata
tggaccatcgccagcatggagagcatcaaggccctcactactgacatggagctcatcctg
gacgtgctccgatcctctccaatggttcaggtggatgagcaaggagagaaggtgcgccct
gatcacaaacgctgcatcatcatactgagggaggttcctgagacgacacctgtagaggaa
gtggaggctctctttaaaagtgatgactgtccgaaagtcattagtgtagagtttgcgcac
aacaacaactggtacatcacattccaatctgacactgatgctcaacaggcacacagatat
ctaagagaagaggtgaaaacatttcagggaaaacctatcatggcgaggataaaagccatc
aacacattctttgctaagaatggctaccgtagcatggacagcagcctgtacacagcccag
cagtctgccccaacccagacccagtacaaccctaacctgtacatgcaacacgtgtacagc
cctcagcagcagtaccctctctacggcatcgtaccacagacctggacaacctctcctaca
ccctacttcgagactcctctggcaccatttcccaacagtggctttgtgaatggattcagt
tctcctggacactacaagactggcaacaactccctccacataactcgccccttcaacaga
aaccggaaccatgtgaaaccccaggtggggagaccaggtgaagtgacccctacatctgtg
gcccctgtccccctggagagcttgactggcctgaggagccctcagccccccaccaccaac
cctgggcccctccagacccctccggacccgacctcaaccttcccccacctctcctccacc
tcctcggaccccaatgatgacggaagcatgtctgtacgcggaagaaggacgacatacaga
ggcacgcgaaggaggagagaggatgagcggatcacgagacccgtccctctggctgaggta
aaggtggcgccccctaagtttgacctggctactactagtttccccccgctgccgggctgt
gtggccagtacccagggagagcccctactggagaacaggatgtctgacgtggtgcgagga
ctgaacagggacaagacaacggaactagccaacaaggaagtgagtgctggcccagcctca
gccccaggacatgaggaggtagtgtctgtctctagtcttgttcagcctacagccaaactt
gctgtacaccctcaagcaccccccgcccctgtcccagcccccagcgtaccacatcaggag
aagaagtgggatagagtggcagagccctcagcccccaaagtcacgccacatagacgtgct
atctctggggccaacccaaccggacccccctccacacagccagctgtgtctggccccaag
ccccaagccagaacagtgtcctctacaccagttacaccgagcaccctggcctccaccacc
accactactactaccaatgcaccacttgagccccgcaagctcagctatgccgaggtgtgc
cagcgagccccccctccaggccccccagcctcggcctcatccacaccaacccagccgctg
cgtgagcagcgtgtcaacaaagcagaggagccaggatccagctccaccaccagcccagac
gaccacaccaggggagatcggcaggacaaggcccaggagagggatgggggctgggagtgc
aaggagagccgaccacgtgaccgtgaccatcgagaccgtgactcccgggatggacggtac
tatcgcaacaatggaccccccagacaggggggctctgggggcctcaagttccatgaacag
agacggggtccccaactggcccgacgcagctccccccaaggatgcccccgacacactggc
aaagagcagaacatccccccggtatcgccaaagtaa
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