Oncorhynchus nerka (sockeye salmon): 115105656 Help Entry 115105656         CDS       T07952                                  Name (RefSeq) THO complex subunit 2-like   KO K12879   THO complex subunit 2 Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one03013   Nucleocytoplasmic transport one03040   Spliceosome Brite KEGG Orthology (KO) [BR:one00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     115105656   09122 Translation    03013 Nucleocytoplasmic transport     115105656  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:one03019]     115105656    03041 Spliceosome [BR:one03041]     115105656 Messenger RNA biogenesis [BR:one03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      115105656 Spliceosome [BR:one03041]  Complex C   Other components    EJC/TREX     115105656  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     115105656 SSDB OrthologParalogGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 Mucin Motif Other DBs NCBI-GeneID:  115105656 NCBI-ProteinID:  XP_029483780 LinkDB All DBs Position LG22:complement(58109029..58184890) Genome browser AA seq 1570 aa AA seqDB search MATRIIPADWIKNWEKSGKHEFVQLCKNLAYKTNHDSTIKDIQAALYELCWHVIQGNFKL DLSASVLCDMMDLRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLFFVPDAIL KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL SGNITSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYMCEPLTLC HILGFKFKFNQEPNEETPTSLYHIAAALLHHNLIELEDIYVHLMPLDASIVEEHKREITE AKQIARKLTMVVVPSEKTEDKEREKEEEKNDKAPDNQKLGLLEALLRIGDWHHAQSIMDQ MPSFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCLLRPLKNKRAPRPAESFEDL RRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSEGRNDNVKDKMDTLLSCFLSIA DQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTVD RAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVVDSLKYLTSL NYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNT LKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQIRNTKKSSQ RLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN LSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEKSNRQQQKVH KYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVKKLQ LQVQVIEENPDVPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAK STKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYT VASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATGFDGGNKADQ LDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVLNLGQALECR VHKICLEEKEKRPDLYALAMGYSGQLKGRKAHMVPENEFHHKEQPVRSATPVSQQNGPGT TAKPATNASKTEEGVSEDADRAKDKSQGAAKPANKANSTAAKVTTSNGNGAPNSTKTIKE RDDKEKSGKEKKEKREKTPGSTLETKGESRREKQRDERGAGGKEERAPREGKEKTPKADR DKQKAEEKSNKEDNKAKTGNGEPKEPSRERDTGAKESKSKEKGGDRSAVSGSLKSPVPRL ESAESERDHKRRKLETHSSPSHSSSVKDNSNEPKDSASKHHINYNLVARSKSREREMTKK ESENTRGRSKEKKTDDKDRKDRKRDHMTTDREMSLESKRRKDENGTNSSNKHSKSASPSS GSPVSADKEKTKRSKSSSKEKGESAKPERNSSGGKKESRHDKEKSDKKEKRDSSGGKDEK KHHKSSDKHR NT seq 4713 nt NT seq  +upstreamnt  +downstreamnt atggcgacacgtatcatccctgctgattggatcaaaaactgggaaaaatctggaaaacac gagtttgtacaactatgtaagaatcttgcatacaaaacaaatcatgacagcacaataaaa gatatacaggcagctttgtatgaactctgctggcatgtcatacaggggaacttcaagctg gacctttctgctagcgtcctctgtgacatgatggatctgcgggatgacatgccatccatt ttagcagatgttttcagtatactagacatagagaccagctctttagaggaaaaaaacaaa cgtgaccattacacccagcttgtgggagcgtgtctgttctttgtgccagatgccatcctg aaggagaggctggacccagagaccctggagtccctgggactcataaagcaagctcatcag ttcaaccagaaaattgttaaaatcaagaccaaactattttacaagcagcagaaattcaac ttgctgagggaagagaatgagggctatgccaagctgatcactgagctgggccaagacctc tcaggcaacatcactagccacatcgtcctagagagcatcaagtccctaataggatgcttc aacctggaccccaaccgcgttctggacatcatcctggaggtgtacgagtgtcgctctgac caagacgagttcttcctgcccctcatcaagtcctacatgtgtgaacccctcaccctctgc cacatcctgggcttcaagttcaagttcaaccaggagccaaatgaggagactcccacgtca ctctaccacatcgctgccgccctcttgcatcacaaccttatagagctggaggacatctat gtgcacctgatgccactggatgccagcattgtagaggagcacaagagagaaatcacagag gccaagcagatcgcccgcaagctcaccatggtggtggtgccctccgagaagactgaggac aaggagagagagaaggaggaagagaagaatgacaaggctcctgataaccagaagctgggt ctgttggaagcgctgctgaggatcggagactggcaccatgcccaaagcattatggaccag atgccctccttctacgccacctctcacaaggccattgctctggcgttgtgccagttgctg catctgactgtggagccactctaccgcagagccggggtccccaaaggggccaagggatgt ttgttgaggcccctgaagaacaagcgggcccccaggcctgcagagagctttgaggacctg cgcagggatgtgttcagcatgctctgctacctggggccccacctctcccatgaccccatc ctttttgccaagatcgtacgcctgggcaagggctttatgaaagagtaccaaagtgagggt agaaatgacaacgtcaaggacaaaatggacacattgctgagttgtttcctgagcattgca gaccaggtgctgctgccctcgctctctctcatggagtgtaacgcctgcatgtcagaggag ctgtggggcctcttcaaactcttcccctaccagcacaggtaccggctatacgggcagtgg aagaatgagacctacacaagccacccacttctggtcaaggtcaaagctcagactgtagac agagccaaatacatcatgaagcgattaaccaaagagaatgtgaaaccatctgggcgccag ataggcaagctgagccatagcaaccccaccatcctctttgactatatcctgtctcagatc cagtggtatgacaacctcatcggtccagtggtagactcccttaaatacctcacctcactc aactatgacgtcatggcttattgcataattgaagcgctggcaaatccagagaaggagaag atgaagcatgacgacactacgatctcctcctggcttcagagcctggccagtctgtgtgga gcggtattcaggaaatacccaattgagttagctggcctcctccagtatgtgaccaatacg ctgaaagcagggaagagttttgacctgttgattctgaaagaggtggtgcagaagatggcc gggatcgagatcactgacgagatgacatcagagcagatggaagctatgactggaggggag cagctcaaagcagagggtggttactttggtcagatccgtaacactaagaagtcgtcccag cgtctaaaggatgccctgttggaccatgatctggccctgcccctctgtctcctcatggcc cagcaacgcaacggagtggtctttctggaggggggtgagaaacacctcaaactggtgggc aagctgtacgaccagtgtcacgacaccctggtgcagtttggtggcttcctggcctccaac ctgagtactgaggactacatcaagcgtgttccctccattgacatcctctgtaaccagttc cacacgccccacgatgctgccttcttcctctcacgccccatgtatggacatcagatcctg tctaagtatgatgagctgaagaaagctgagaagagcaaccggcagcagcagaaggtccat aagtacgtggctgcgtgcgagctggtgatgtcgccggtgcacgaggccgtggtgtccctg cacccaccccgtgtctgggacgacctccgaccccagttctatgccaccttctggtcgctg accatgtacgacctggccgtgccacacaacgcctacgaccgcgaggtgaagaagctccag ctccaggtgcaggtcatcgaggagaaccctgatgtgccaatgaacaagaagaaaaaggag aaggagcgctgcacggccctacaggagaagttgcaggaggaggagaagaagcagctggag cacgtccagagggtcctgcaccgcctcaaactggagaaggacaactggctcctcgctaaa tccaccaagaatgagaccatcactaagttcctgcagctgtgtctgttccctcgctgtatc ttctctgccatcgacgctgtgtactgcgcccgctttgtggagctggtgcaccagcagaag acacccaacttctgcaccctgctctgctatgaccgggtgttctctgacatcatctacacg gtggccagctgcacggagaacgagtcgcgacgctacggccgcttcttgtgctgcatgttg gagacggtgacccgttggcacagtgaccgagctgtctacgagaaggagtgtggtaactac ccaggcttcctgaccattttcagagccacaggcttcgacggagggaacaaagcagaccag ctggactatgagaacttcagacatgtagtgcacaaatggcactacaagctgactaaagca tcagtccactgcttggagacgggggaatacacccacatccggaacatcctgatcgtgctg accaaaatcctgccctgctaccccaaagtgctgaacctgggccaggcactcgagtgccgt gtccacaagatctgtctggaggagaaggagaagaggccagacctctatgccttagccatg ggctattctggccagttgaaaggcaggaaggcgcacatggttcctgagaatgagttccac cacaaggagcagccggtgaggagcgccacccctgtcagccagcaaaacggccctggcacc acggccaagcctgccaccaacgccagcaagacggaggagggtgtcagtgaggacgccgat cgagccaaggataaatctcagggtgcagcgaagccagcgaacaaagccaacagcacagcg gccaaagtgaccaccagcaacgggaatggggctcctaacagcaccaaaaccatcaaagag agggatgacaaagaaaagagcgggaaggagaaaaaagagaaaagggagaagactccaggc agcactctagagacaaagggggagagccggcgggagaagcagagagatgagagaggagca ggcggcaaggaggagcgggcgccacgcgagggtaaggagaagacgcccaaggcagaccgg gacaagcagaaggcggaagagaagagcaacaaagaggacaacaaggccaagaccggcaac ggagagcccaaggagccatccagggaacgcgacaccggagccaaggagtctaagagcaaa gagaagggaggagacaggagtgccgtgtccggatccctcaagtctccagttccccgattg gagtctgctgaatctgagagggatcacaaaaggcgaaaactggagacccactcttcacca tcccattcctcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcac cacatcaactacaatttggtcgcgcggtccaagagcagagagagagagatgacaaagaaa gagtctgagaatacccggggccgttccaaagagaagaagaccgacgacaaagaccgaaag gacaggaagagagatcatatgaccactgaccgtgagatgagcctagaatccaaacgcaga aaagatgaaaatggaaccaattcctccaacaaacacagcaagagcgccagtccctcctca ggctccccagtctctgctgacaaagagaagaccaagaggtcaaagtcctctagcaaggag aagggagagtctgctaaacctgagagaaactcctccgggggcaagaaggagtctagacac gacaaagaaaaatctgacaagaaggagaagagggacagcagtggtggaaaggatgagaaa aaacatcataagtcttctgacaagcacagataa

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