Oncorhynchus nerka (sockeye salmon): 115105787
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Entry
115105787 CDS
T07952
Name
(RefSeq) protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
115105787
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115105787
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115105787
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115105787
Cell adhesion molecules [BR:
one04515
]
Cadherins
Protocadherins
115105787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
115105787
NCBI-ProteinID:
XP_029484033
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All DBs
Position
LG22:complement(64681908..64842985)
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AA seq
1194 aa
AA seq
DB search
MDFMELHMGAVLLWVLVLDFGGWAEAGILYRVQEEQPPSTLIGSLASDQGLPDSGHLYKL
EVGAPYLRVDGKTGDIFTTEIPIDRETLRACRSMVRGKPCFLEFEVSVTDLIHNQSPRLI
EGRIEVQDINDNTPQFPSPVLTISVPENTHMGALFSIPLATDRDSERNRVADYALTAGPD
AATLFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLNIKAVDGGNPQRYSSALLRVVVAD
ANDNAPKFDKATYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQALDPVPKLLRI
DRSTGIIYVKGPLDREEISDLTFYVVARDKGPQPKSSKTFVTIEVTDQNDNSPAVEIRGI
GLVSHSDGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASESSTDN
KRKYFLQTTTPLDYEKVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSLTLFE
VNFTEENQPGDKVVDVVATDPDSGTNAELVYSIVADTSTRGLFEIDPDSGEVRAQSPLDR
EHRAHYEFRVTAADKGSPSHRGTATVVVNVLDRNDNDPKFMLSGYSFSVLENMPPLSAVG
MVTVLDIDQGENARVQLSVEPDGGRFVVQNGTGTILSSISFDREKESSFSFRLKAVDGGE
PPRSSYVGITINVLDENDNDPVVTKPSNSSFRHLSPLGSPDSRVELVEAEDLDTGPNAEL
VFSITGGNPYELFSISSTTGEITLAKELTQKHGGLHRLVVRVSDRGKPARHTTALVHIFV
NETISNVSLVEALVGHSLYTPLETDIAGDPDYGLAAQRSNILYGSLAGVAGVVMVIVVVV
FIRHRIQRETKSGYQAGKKETKDLYTPKQGPKNGKGKKGRKGKPSKSPKPLGEEEEVSLQ
KSLKFNLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHHVVQD
LPATNTFVGIGGDDNSTGSDQYSDYSYKASQPKYNSKQLPHRRVTFSTANPVQDLQDASQ
HSYYDSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGEMEHPENDMRSIPDVA
MTGNCTQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGG
EEYRASIPPSRSAYSNSGHALRQDCPKEEVPLSVASEFLPTSPPSHTPKQEIYL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacttcatggaactgcacatgggagcggttttgttgtgggtcctggtgttggatttc
ggtggttgggctgaggctggtatcctgtaccgtgtccaggaggagcagccgcccagcacg
ctgataggcagcctggcatcagaccagggcctgccagactctggtcacctttacaagcta
gaggtgggcgctccatacctgcgtgtagatgggaagacaggggacatctttaccacagaa
attcccatagacagggagacactgagagcctgccgcagcatggtcaggggcaaaccctgc
ttccttgagtttgaagtgtctgtcacagatctgatccacaaccaaagccccaggctcatc
gagggtcgcatcgaggtccaggacatcaacgacaacactccgcaattcccctcccctgtg
ctcacaatctctgtcccagaaaacacccacatgggggcgctgttctccatccccctggcc
acagacagggactcggagaggaacagggtggccgactacgccctaaccgcggggccagat
gcagcgactctcttcggcctgcaagtggcagaggacaggggagagaagctgccccaactc
atcgtcctgggaagtctggaccgggagctcaaggacagttacgacctgaacattaaggct
gtggatggaggtaacccccagcgctacagcagtgccttgctgagagtggtagttgctgac
gcaaacgacaatgcgccaaagtttgacaaggccacgtatgaggctgaagtgtcagaaaac
agccctgtgggacattccgtgttgcaggtgaaagccaatgactctgacatgggccccaat
ggagagatagagtatacgctacaccaggcattagacccagtgccaaaactcctgcgaatt
gatcgttccactggcatcatctatgtcaaagggcctttggatcgggaagaaatcagcgat
ttgacattttacgtagtggccagagacaaaggtccccaacccaaaagttccaagaccttt
gttactatcgaggtgactgaccagaacgacaattcccctgctgtggagatccgtgggatc
ggcctggtgagccacagtgacggtgtggcaaacatatcagaggacatgcccgtgggcacg
gcggtggccttggtccaggtgtctgacagggatgagggggagaatgcagtggtcacctgt
gtggtggcaggggacgtgcctttccagctgcgcccggccagtgaatcgtccactgacaac
aagagaaaatatttcctgcagaccaccaccccactggactatgagaaggtaagggaatac
cgtgtggagattgtggctgttgattctggcaatccagctctctccagtactaactcatta
aaggtgcaggtgactgatgttaatgacaactctccagtgttttccctgaccctgttcgag
gttaactttacagaggagaaccagccaggggacaaggtcgtggacgtggttgccacagac
cctgacagtggcactaatgcagagcttgtctatagcatcgtagcagacacatctactaga
ggcctgtttgagattgaccctgactcaggggaggtgagggcacaaagccctctggacaga
gaacatagagcacattatgagttcagggtcaccgcagccgataaaggctcccccagtcac
agaggaacagccacggtcgtggtcaatgtgctggaccgcaatgacaacgaccctaagttc
atgctgagtggctacagtttctctgttctggagaacatgcccccactcagcgctgttggg
atggtgacggtgctggacatagatcagggagagaacgcaagagtgcagctctctgtggag
ccagacggaggaaggtttgtggttcagaacggaacaggaaccatcctgtccagcatctcc
tttgaccgggaaaaggagagcagcttcagtttccgtctgaaggccgtggatgggggagag
cctcccaggtcctcctatgtaggcattaccatcaatgtcctggatgaaaacgacaatgat
cctgtggtcaccaagccctccaactcctccttcagacacctgtcccctctaggttcccca
gacagccgtgtggagctagtggaagctgaagacctggacactgggcccaatgcagagctg
gtcttcagcatcactggtggaaacccttatgaactcttcagcatctcctccactactggg
gagatcaccctggccaaggagctgacccagaaacatggtgggctccatcgcctggtggtt
agggtgagtgacagaggcaagcctgcacgccacactactgccctggtgcatatcttcgtc
aatgagaccatctctaatgtcagcctggtggaggcgctggtgggacacagtctctacacg
cctctggagacagacatcgctggtgaccctgactacggccttgccgcccagcgcagtaac
atcctgtacggcagcctggctggagtggcaggcgttgtcatggtgattgtggtggtggtg
tttattcgccaccgcattcagagggagacgaagagtggctaccaggctggcaagaaggag
accaaggacctttacacccccaagcaggggcccaagaacggcaaaggcaagaagggcagg
aaaggaaagccctctaagtcgcccaagcccttgggagaggaggaagaggtcagcctccag
aagagtctcaagttcaacctggatggggtcaacgacagccccaggatccacctgcccctg
acatatcccccaggtagcccagacctgggcagacactaccgctccaactctcccctgccc
tccatccagctgcaggcccagtcaccgtcggcctcccagaagcatcatgtggtccaggac
ctccctgccactaacaccttcgtagggataggaggagatgacaactcaacaggttcagac
cagtactcggattatagctacaaggccagccagccaaagtacaacagcaaacagctcccc
catcgcagagtgacattctccacagccaatccggtgcaggatctgcaggatgcatctcag
cacagttactatgacagcggcctggaggagtcagagacgcccagcagtaagtcatcgtct
ggcccccgtatcgggcctctgaccctgcctgaggatcactacgagaggaccaccccagac
ggcagcattggggaaatggagcaccctgaaaatgatatgcgttccattcctgatgtggcc
atgactggtaactgtactcaggagtgcagtgagctgggtcactcagacgcctgctggatg
cctgggcagccctccccagtgcgcaagaccaggaatccccccaaactctccaccttcgtg
ccttaccaggagagagggagcctgggccgcctggccaacgggagcgccaggctgggtggc
gaggagtaccgagccagcattccgccctcccgtagtgcctattccaacagcggccatgct
cttaggcaggactgcccaaaggaggaggtgcccctgagcgtggcctctgagttcctgccc
acctcccctcctagccacacccccaaacaagagatctacctgtga
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