Oncorhynchus nerka (sockeye salmon): 115105856
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Entry
115105856 CDS
T07952
Name
(RefSeq) transcription factor RFX3-like isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115105856
Transcription factors [BR:
one03000
]
Eukaryotic type
Other basic domains
RF-X
115105856
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
ThermoDBP-RP_arch
HisKA
Motif
Other DBs
NCBI-GeneID:
115105856
NCBI-ProteinID:
XP_029484158
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Position
LG22:67828394..67863698
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AA seq
765 aa
AA seq
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MQTPEAGAESASTVHTAVPVQPAGSAQQVSSQAQTVQQVQHVYPAQQVQYVEENSGVYTN
GNIRTYSYSEPQLYSQNSGGSYFDTQGSSSQVSTVVSSHGMANNGGGNGGLTMGLAGGQI
ISSSGAYLIGGNTMDNSAPHPAAQTTRTSPATVSIEMAIETLQKTEGLSSQRSSLLNSHL
QWLLDNYETAEGVSLPRSTLYNHYLRHCQEQKLDPVNAASFGKLIRSIFMGLRTRRLGTR
GNSKYHYYGIRLKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPMQKVDGVSGENFSGGGQ
HTPSAAEQTVIAQSQHHQQYLDTSRALPDFVELDLGETNVDNVGPDDIKALQSLYREHCE
AILDVVVNLQFSLIEKLWQTFWRYSPSDSVEGATITENSGVSEIEGRLPCCRLLVLCRNE
AVLKWMSSCDHLMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLNNAMNTIPQRMI
QTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC
QCEEGVVQRLEQDFKATLQQQSSLEQWAAWLDNVVTQVLQPFEDRPSFPRAARQFLLKWS
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGQTPISVMGEFDDLNA
MSPANIDKDEVSEMDSDLEEDMEESGEPLAKREKAEVEHEHQVIQVIQVGALEDGSNPVV
GVLQPGILHSLPQPPQNHAEHILTTSAATTTIRHCSATGNTYASV
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgcagacccctgaggcaggcgctgaatccgcctccactgtccacaccgctgtgcctgtg
cagcctgcaggctccgcccagcaggtgtcctctcaggcccagactgttcaacaggttcag
catgtatacccagcacaacaggtgcagtacgtggaggagaacagtggcgtctataccaac
gggaacatacggacatactcgtactccgagccccagctgtacagccagaacagtggaggg
agctactttgacacgcagggcagctcatcccaggtgtccacggtggtgtcatcccatggc
atggccaacaacggaggggggaacggggggctgaccatgggtctggctggggggcagatc
atcagcagctctggggcctacctcatcgggggcaacaccatggataactctgccccccac
ccagcagcccagaccacccgaacctccccggccactgtgagtattgaaatggcgattgag
acgctccaaaagactgaaggtttatccagtcagagaagctcactactcaacagccatctg
cagtggctactggataactatgagacagcagagggggtgagtctgcctcgctccaccctc
tataaccactacctgcgccactgccaggagcagaagttggacccggtcaacgctgcttcc
tttggcaaactcatccgctccatcttcatggggctccgcacgcgtcgcctgggcacacga
gggaactcgaagtaccactactatgggatccggttgaagccggactctcctctcaacaga
ctgcaagaggacatgcagtacatggccctcagacagcagcctgtccaacagaaacagagg
tttaagccgatgcagaaggttgatggtgtatctggggagaacttctcaggcggaggccag
cacacccccagtgcagcggagcagactgtcatcgcacagagccagcaccaccagcagtac
ctggacacatcgcgggccctgccagactttgtggagctggacctgggagagaccaacgtg
gacaacgtcggcccagacgacatcaaagctctccagtcactctacagagagcactgtgag
gccattctggatgtggtggtcaacctccagttcagtctaatagagaagctgtggcagact
ttctggcgctattctccttctgactcagtggagggcgccaccatcacagaaaacagtggt
gtgagtgagattgagggccgtctgccctgctgcagactgctggtgctctgtaggaacgag
gctgtgctcaagtggatgagttcctgtgaccacctgatgtaccaggccctagtggagatc
ctcatccctgatgtcctcagacccatccccagtgccttgactcaagccatccgcaacttt
gccaaaagcctggaaggctggctcaacaatgccatgaacaccattccacagagaatgatc
cagaccaaggttgccgctgttagtgcctttgctcagacgctgcgtcgctacactagtctg
aaccacctggcccaggcagcacgcgccgtgttgcagaacacctcccagatcaatcagatg
ctcagcgacctcaaccgcgtcgacttcgccaacgtgcaggagcaggcgtcgtgggtgtgt
cagtgtgaggagggtgtggttcagaggttagagcaggacttcaaggccaccctgcagcag
cagagctctctggagcagtgggctgcctggctggacaacgtggtcacccaggtcctacag
cccttcgaggacaggcccagcttccccagggcggcacgacagttcctgctcaagtggtcc
ttctacagctccatggtgattcgggacctgaccctgcgcagcgcggccagttttggctcg
ttccacctgatccgcctgctctacgacgagtacatgttctacctggtggaacaccgcgtc
gcccaggcaaccggtcagacacctatcagtgtcatgggagaattcgatgacctcaacgcc
atgtcacctgctaacatagacaaagacgaggtgagtgagatggacagtgacctggaggag
gacatggaggagtccggggagccgctggccaagcgggagaaggctgaggtggaacatgag
caccaggtgatccaggtgattcaggtgggggctctggaggacggcagtaaccccgtggtg
ggggtgctccagccgggcatcctgcactccctgccccagcccccccagaaccatgctgag
cacatcctcaccacctccgccgccaccaccaccatccgccactgcagtgccaccggcaac
acctacgcctccgtctga
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