Oncorhynchus nerka (sockeye salmon): 115105946
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Entry
115105946 CDS
T07952
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115105946
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115105946
09144 Cellular community - eukaryotes
04510 Focal adhesion
115105946
09142 Cell motility
04820 Cytoskeleton in muscle cells
115105946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115105946
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115105946
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115105946
Membrane trafficking [BR:
one04131
]
Endocytosis
Phagocytosis
Opsonins
115105946
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115105946
Exosomal proteins of colorectal cancer cells
115105946
Exosomal proteins of bladder cancer cells
115105946
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115105946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF_MSP1_1
cEGF
DUF7630
EGF
Motif
Other DBs
NCBI-GeneID:
115105946
NCBI-ProteinID:
XP_029484338
LinkDB
All DBs
Position
LG22:70970591..70989522
Genome browser
AA seq
939 aa
AA seq
DB search
MGLWTTLIVASQLILNLCSEVGAQGSVYDLLNSPDCLPDLLQGGLVEQGVNEAFILTTFK
LQPKTGTTVFGLYNPRDNSKYFEFTVLGKLNRAVLRYLRSDRRMSSVTFNNIQLADGQRH
RLLFHLKGMQQGPGGVELHLDCRLVETVRDLPSVFQGLPAGYGVVELKSMQGKAEEELEE
LKLVVGDTFENVASLQNCHQQGDSVQTLGVNTKQLSNQMLDLTKVINELKDVLIQQVKET
SFLRNTISECQACGLGGSEVMKQKCAPGVCFRGDMCIETEDGVECGPCPDGYTGDGFSCD
DVDECQFNPCFPGVKCVNTAPGFRCDACPLGYSGLAVEGVGVVYAQTNKQVCDDIDECKE
PNNGQCTANSLCHNSAGSYVCGGCKTGYTGDQVKGCKPERSCGNSLTNPCDVNAQCFQER
DGSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDMLCKKDNCMRVPNSGQEDADKDG
QGDACDTDADGDGILNEQDNCWLKPNVDQRNSDKDSHGDACDNCRTVENPDQRDTDSDGK
GDACDEDMDGDGLKNFLDNCQQVVNLDQFDRDGDGVGDACDSCPDIPNPNQSDIDHDLVG
DSCDTNQDSDGDGHQDTKDNCPNVINSSQLDTDKDGLGDECDDDDDNDSIPDFLLPGPDN
CRLVPNPDQLDENSDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPEG
DAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGY
QDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTNDQ
VRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGRLG
VFCFSQENIIWSNLKYRCNDTIPGDFQEFSMQHGVVDGL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggggttgtggacgacactgatcgtggcttcgcaactgatcttgaacctgtgttcggaa
gtgggagcccagggctcagtgtatgatctcctcaattccccggactgtctgccagacctg
ctgcagggtggcttagtggagcagggtgttaatgaggctttcatcctcaccaccttcaag
ctgcagcccaagactggcaccacagtgtttggcctgtacaacccacgggacaacagcaag
tactttgagttcaccgtgctggggaaactcaacagagccgtgctgcgttacttgaggagt
gatcggaggatgagctccgtgaccttcaacaacatccagctggcagacggtcagcgccac
cgcctccttttccacctgaagggcatgcagcagggacctgggggggtggagctacacctg
gactgcaggctggtggagacggtccgggatctcccctccgtgtttcagggtctgcctgca
ggctacggtgtggtggagctgaagagcatgcagggcaaagcagaggaagagctggaggag
ctgaaactagtggtgggagacacgtttgagaacgtagcttctcttcaaaactgccaccaa
caaggagattcagtgcagactctgggggtcaacacaaagcagctgtccaatcaaatgctt
gatctcacgaaggtgataaacgagctgaaagatgtcctcattcagcaggtcaaagagaca
tcttttctaagaaacaccatctctgagtgccaggcttgtggactgggtggaagcgaagtc
atgaagcagaagtgtgcccctggcgtttgtttccgcggtgacatgtgtattgagacagag
gacggggttgagtgtggaccctgccctgacggatacacaggggacggcttcagctgtgat
gatgtggatgagtgtcaatttaacccatgcttccccggggtaaaatgtgtgaacacggct
ccagggttccgctgtgacgcctgtcctctgggctactctggtctggctgtggaaggggtg
ggagtggtctacgcacagacaaacaaacaggtctgtgatgacattgacgagtgcaaagaa
cccaacaatggacagtgcaccgccaactctctctgtcacaactctgcgggttcatatgtc
tgtgggggctgtaagacaggctacacaggggaccaggtgaagggctgtaagccagagagg
agctgtggtaacagtttgaccaacccctgtgatgtcaacgcccagtgtttccaagaaaga
gacggctccatcacctgtcagtgtgggattggctgggctggtaatggctacctatgtgga
aaggatacagacattgatggataccctgatgagaaacttaagtgcaaggatatgctctgt
aaaaaggataactgcatgcgcgttcctaactctggccaagaggatgctgacaaggacgga
caaggagacgcttgtgacaccgacgctgatggtgacggtattctgaatgaacaggataac
tgctggctgaagcctaacgtggaccagaggaacagtgacaaggacagccatggtgacgcc
tgtgacaactgtcgcacggtggagaaccctgatcagagggacactgacagtgatgggaaa
ggagacgcctgcgatgaagacatggatggagacggcttgaagaacttccttgacaactgc
cagcaggtggtgaacctggaccagtttgaccgggatggagacggagtgggagatgcctgt
gacagctgccctgatatccctaatcctaaccagtccgacattgaccatgacctggttggg
gattcttgtgacacaaatcaagacagtgatggcgatggtcaccaggacaccaaggacaac
tgtcccaacgtgatcaacagctcccagctggacacagacaaagacggcctgggggatgag
tgtgacgatgacgacgacaacgacagcatccctgacttcctgctaccaggacctgacaac
tgcagactggtgcccaaccccgaccagctggatgagaacagtgatggtgttggagatgtg
tgtgagtcagactttgaccaggacaaggtgatagacaggatagacaactgtccagagaac
gctgaggtcactctgacagacttcagagcctatcagacggtggtgctggacccggagggc
gatgcccagattgaccccaactgggtggtacttaatcagggaatggagattgttcagacc
atgaacagtgaccctggacttgctgtgggttacactgcgttcagtggagtggactttgag
gggacattccatgttaacacggtgactgacgatgactatgcaggcttcatctttggctac
caggactcctcctccttctacgtggtcatgtggaaacagactgagcagacctactggcag
gcgacaccctttagagcagtggccgagcctggcatccagctcaaggctgtgaagtctaag
tcaggtccaggggagcacctgaggaactccctgtggcacacaggggacaccaacgaccag
gtgcgtctgctgtggaaggaccccaggaacgtgggctggaaggacaaggtttcctaccgt
tggtacctgcagcaccgaccccaggtcggatacatcagggcccgtttctatgaggggaca
gagctggtggctgactctggtgtgaccatcgacaccaccatgagaggaggccgactgggc
gtgttctgtttctctcaggaaaacataatctggtccaacctaaagtaccgttgcaatgat
accatccctggggacttccaggagttcagcatgcagcatggcgtcgtcgacggtctctaa
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integrated database retrieval system
