Oncorhynchus nerka (sockeye salmon): 115106008
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Entry
115106008 CDS
T07952
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03420
Nucleotide excision repair
one04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115106008
09124 Replication and repair
03420 Nucleotide excision repair
115106008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
one03051
]
115106008
03400 DNA repair and recombination proteins [BR:
one03400
]
115106008
Proteasome [BR:
one03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
115106008
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
115106008
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GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
UBA_3
CUE
Ubiquitin_4
Dsc3_N
OTU1_UBXL
RAP1
Motif
Other DBs
NCBI-GeneID:
115106008
NCBI-ProteinID:
XP_029484433
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Position
LG22:74010489..74032568
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AA seq
377 aa
AA seq
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MQITLKTLQQQTFKIDIDEEETVKTLKERIENEKGNDGFPVAGQKLIYAGKILNDDTAIK
DYKIDEKNFVVVMVAKPKAAPAAAQPSSSAATTSSITTAPTVPTAASPGSDNPPEGSKPA
EERPCSTSAPASTPTSSSGLLTNVNMFEEATSALVTGQSYENMVTEMMLMGYEREQVVAA
LRASFNNPDRAVEYLLTGIPAGEESHAGADPVVPSVGGGTPALNTGSMTTPASVATGANP
LGFLVNQPQFLQMRRIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPAQEG
GQGGGGGGGGGGGGVGVGGEAGSGMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK
NENLAANFLLQQNFDDD
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcactttgaaaaccctccagcagcagacatttaaaatcgacatagacgaagag
gagacggtaaaaaccttaaaggaaagaattgagaatgagaagggaaacgatggttttccg
gttgcagggcagaaattgatatatgcagggaaaatcctaaatgatgacactgctatcaag
gactataagattgatgagaagaactttgtggttgtcatggtggcaaagcctaaagcagcc
ccagcagctgcccagccttccagttctgccgccaccacctcctccattactacagccccc
actgtacccacggctgcctcgccaggctcagataacccaccagaggggtccaaaccagcc
gaggagaggccctgcagcacttcagcaccagcatcaacccccaccagttcctctggtcta
ttgacaaatgtgaacatgttcgaggaggcaacttctgctctggtgacaggccaatcgtat
gagaacatggtgacagagatgatgctgatgggctacgagagggagcaggtagtggcagcg
ctcagagccagcttcaataacccagacagagctgtggagtacctgcttacagggatccca
gctggggaggagagccatgcgggtgctgacccagtggtgccctctgtgggtggaggaact
ccagctctcaacacaggcagtatgacaacccccgccagcgttgcaacaggcgccaatcct
ctggggttcctggttaaccagcctcagttcctccagatgagacggatcatccagcagaac
ccctctctgctccctgccttactacagcagatagggagggagaacccccagcttctgcaa
caaatcagcagccaccaagagcagtttatccagatgctgaacgagccagcccaggagggg
ggacagggtggtggtggtggaggaggtggtggtggtggtggagtgggggttggtggggag
gctggaagtggcatgaactacatccaggtcacaccccaggagaaggaggccattgagcgg
ctaaaagccctaggattcccagaaggacttgttatacaggcctactttgcctgtgagaag
aacgagaacttggctgctaacttccttttacaacagaactttgacgacgactag
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