Oncorhynchus nerka (sockeye salmon): 115106042
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Entry
115106042 CDS
T07952
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115106042 (taf1c)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
115106042 (taf1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
115106042
NCBI-ProteinID:
XP_029484498
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All DBs
Position
LG22:complement(76312600..76328322)
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AA seq
1095 aa
AA seq
DB search
MDYIFPRKLFPVYFNSGPPSSTFRHNVGGWGSYGQVVDVNVPLHEKDSLPKVDWKFESQH
QVKGEPWVPVEPIAIPLLRPKRGPKWSSTVLSDPMDFSEHMQNLYQYKYKDAFCTMSHIL
GDKFNFGQGRRKGSERNAVHMWQMEHFMHTFKYKKCELTHFGRQAKRYHNLLSDVIHDIP
PALLADHLHEELTYQRGQEQFSDHATGGAIGYISFTNTSISQQGCLVYPGKAGLNKLNFH
RVVLEFQDGKPPCFDVSHKPLSFQLNGTIRQITIGLQQDECHVGVRCDHLCGVWMVSEKN
IPKSLEVIQTKQPATCLSASPHVQGELLVASESGAAYLWTVGKGLQKFRQEYSNLYFNCK
SSWRWCDFSGHPRVMVYADRTGVELTDIRTKDSYSHTLFRIGQTPDCKSGERVILSNYLR
DVHTFHHLVTTQHSAYVMDERFPCLPMIQWDHMMEHPPMFSQVVAGLPSGGGTTKVLLGS
QRSQEVILLQYSGGREEACVTRGPPRALLSPRDSLGHLPVQLPHRQHHAQDRLANPAAGL
TVIHQSRAKEDCICVLQLTEAGDIFYHTLKSQTECFSKDDPPTPTQNSVGPEGRRGDVQG
LKQPVDTLRKGLHQTLGTPRSSTLDETWYSSGPPEGDSGFEGRGQPWDTLRAGLEMVIND
PHDDPYPTLATNTGLTDTQETTAVVPLPTAQCLDTNVNINPVRLKAKVSDEALLIWRKWF
LKLFKCPWERRNLPHKTTNTKDLLPDDSLHRDPLEDHCRRTLREDLRETMRNGNVLVHRN
TCLKPLALVPVPAPVEPSEWADVLSERMSASWEPGLGGWRSWWEERLGLNREEKVEALRR
KRRRQKRAKAHSRIDLSGSFTSSVSYQSDLDSASLSGWSSAASQYASSDVDSVATSCDNT
KWVTLSEPGTPRATTPTPQTSSSQPTTPRREFGSKPTTPLEQLSSFLSQPTIPYSQSSSS
SLPTVPYSQSSSSSQPTIPHTQFTSSELLFTPKKQPAIGKSSPWTTAGSDSSAADILRTV
VATQKPKPQNQDYLNSLFGSQEPMDASQGVGFNESRHNTPLATSSQLSSISSSQRNLKVG
LTSSQPKRKKSRMGF
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggattacattttcccacgaaaacttttcccggtttatttcaactctgggccccccagt
tctacgtttagacataacgtcggaggttggggttcttatggtcaagtggtggacgtaaac
gtccctctacacgagaaagacagtctaccaaaagtagattggaagtttgaatctcaacac
caagtgaagggagagccttgggtgccagtggaacctatagcaataccacttctgcgacca
aaaagaggccccaaatggtcatcaacagttctgtcagatcctatggacttctcagagcat
atgcagaacctctaccagtataagtacaaggatgctttttgcacaatgagccatatcctg
ggggacaaattcaactttggacaggggaggagaaagggaagtgaaagaaatgctgtacac
atgtggcagatggagcatttcatgcacacatttaaatacaaaaagtgcgagttaactcat
tttgggcggcaggccaaaaggtaccacaacctgttatcagatgtgattcatgacatccct
ccagccctgctagctgatcatctccatgaggagctgacctatcagagagggcaggagcag
ttctctgaccacgccacagggggtgccattgggtacatttcctttaccaacaccagtatc
tctcagcaaggctgtctggtgtaccctgggaaagctggactaaacaagcttaacttccac
agggtggtgctagagttccaagatgggaagcctccatgttttgatgtgagccacaagcct
ctctcattccagctcaatggtacaatcagacagatcaccatcggccttcagcaggatgaa
tgtcacgtgggggtgcgctgtgaccacctgtgtggtgtctggatggtcagtgagaagaac
atccccaagtctctggaggtcattcagaccaagcagcctgctacatgtctcagtgccagt
ccccatgtccagggagagctcctggtggccagtgagagtggagctgcctatctatggaca
gtgggcaaaggtttgcagaagttccgtcaggagtacagtaacctgtacttcaattgtaag
tcgtcatggagatggtgtgacttctctggccaccccagggtgatggtgtatgctgaccgg
acaggtgtggagctcactgatatcaggaccaaagatagttatagccacacgttgtttcgt
atcggccaaactcctgactgtaagagtggagagagagtcatcctgtccaattacctgaga
gatgtccacaccttccaccacctcgtcaccacacagcactctgcttacgtcatggatgag
cgtttcccctgcctccccatgatccagtgggatcacatgatggagcatcctcccatgttt
tcccaggtcgtggcggggttgccgtcagggggcgggactaccaaggtgctgctgggctct
cagagatcacaggaagtgatcctgctacagtactcgggtggtagggaggaggcctgcgtc
accagaggcccacctcgggccttgctcagccccagagacagccttggacacctgcctgtc
caactcccccacagacagcaccatgcccaggacagactagccaatcctgctgctggtctt
actgtcatccatcagagccgagccaaggaggactgtatctgtgtgctgcaactcactgag
gccggagacatcttttaccacacgctaaagtcccagactgagtgcttcagtaaagacgac
ccaccgacaccaacccagaactccgtgggacccgagggacgtagaggagatgtacaggga
ctaaaacaaccagttgatacattaagaaaagggctgcatcaaacgttaggaaccccaaga
agcagtaccctagatgagacatggtattcctctggacctcctgagggtgactctgggttc
gagggaagggggcagccgtgggacacacttagggctggactggagatggttatcaacgac
cctcatgacgacccgtacccgacgctagcaacaaacacaggattaactgatactcaggaa
accactgctgtagttcctctacctacagcccagtgtttggacactaatgttaacattaac
cccgtcaggctaaaggctaaagtcagtgatgaggctctgttgatttggaggaagtggttc
ctcaaactgttcaagtgcccctgggagcgccgtaatctcccacacaagaccacaaacacc
aaggatcttctacccgacgacagccttcacagagacccgttggaagatcactgtcgtcgg
accctgagggaggacctgagggagaccatgaggaatggtaatgttctcgtccacagaaac
acctgtctcaaacccctggctctggtccctgtcccggcacccgtggagccctctgagtgg
gctgatgtgctgagcgagaggatgagtgcatcgtgggagcctgggcttgggggatggagg
agctggtgggaggagaggctggggctgaaccgagaggagaaggtggaggctctgcggagg
aagaggaggagacagaaacgggcaaaggctcacagtcgtatcgacctatcgggcagcttc
acctcgtccgtcagctaccaatcagacctggacagcgcttctctctccggttggtcgtcg
gcagccagtcagtacgccagctccgatgtagacagtgtggccacaagctgcgacaacacc
aagtgggtcaccctatctgagccgggtacaccgagggctaccacaccaacaccacagacc
agtagctcacagcccacaacacctcgtagggagtttggttcaaaaccaactacaccactg
gagcagcttagtagtttcctctcccagcccactatcccctattcacagagcagtagtagt
tcactgccaactgtcccctattcacagagcagtagtagttcacagcccactatcccccat
acacagttcactagttccgagctactgtttacacccaaaaaacagcccgccattggtaag
tcgtcgccctggacaacagcaggttctgactccagcgcggcggacattttgagaacggtg
gtggcaacccagaagcccaagccacagaatcaggattatttaaattctctcttcggatcc
caggagcctatggatgcctcacagggagtaggatttaacgagagcagacataatactcct
ttggccacctcttctcagctgtcctccatctcttcttcacagaggaacctgaaagtggga
ctaacctcctcacaacccaaaaggaagaagtctcgtatgggtttctga
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