Oncorhynchus nerka (sockeye salmon): 115106219
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Entry
115106219 CDS
T07952
Name
(RefSeq) leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1
KO
K24491
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115106219
Domain-containing proteins not elsewhere classified [BR:
one04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
115106219
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
LRR_1
Ig_3
fn3
ig
Ig_2
LRR_5
C2-set_3
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
115106219
NCBI-ProteinID:
XP_029484641
LinkDB
All DBs
Position
LG23:21647976..21657509
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AA seq
650 aa
AA seq
DB search
MFLAFVLGLYLATGALPSSVSACPSQCSCFFHNLSDGSMARSVICNDPEISIVPASFPVD
TSKLRIEKTAIHRIPSEAFSYLPNLEFLWMSFNVLSSLKPDSFRGMLNLEELRLDGNALT
AFPWESLMDMSSLTLLDLHNNQLTSVPADATIYFKNLTYLDLSSNNLLTVPAEVLATWLT
VKPVQGPENSKIILGLHDNPWLCDCRLYDLVQFQKLPTFSVALIDTRLRCAAPESLSGVL
FSDAELRRCQAPRVHTAVAHVRSAVGNNVLLRCGTIGVPSPDLAWRRAEGKALNGTVQQE
NSKEGIIWSILKFPAVSYRDSGKYVCKATNYAGNAETIISLVVSDAPPKPDNNNNQTSMV
AATVKKNKVNKPNGMGKAAYQEKLVDRLVVPTPNPQPPPAVVDSSPEPEGVVVGSVADRA
TPGPAKLPSPDGLLELEKTNLSNLAQAQYDPDRIVRSVKVLGDTENTITLNWRAPKAKNT
TAFSVLYAVFGERDMRKINVAAGQNRVFIEGLVPKTKYIACVCVRGLIPKKEQCVIFSTD
EAASAAGTQKLINVIVITVACVIAVPLTVIVCCGALKRRIQKIWGKKSKDIQDSYVTFET
LSPGTKAKGLEGEYLTRLNPEESNRLLSARSSLDSEATAKIEGQPNEYFC
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcgcgttcgtcttgggactctacctggcgacaggtgcgctaccctcctcggtg
agcgcgtgcccgtcacagtgtagctgtttttttcacaacctaagtgatggatctatggcc
aggagtgtaatttgcaatgaccccgagatctccattgtgcctgccagtttccccgtggac
acgtccaagctgcgaatcgagaaaacagccatccatcgtatcccgagcgaagccttcagt
tacctccccaatctggagttcctctggatgtccttcaatgtgctgtcctctctcaagccg
gacagtttccgtgggatgctaaatctggaggagctgcgactggatgggaatgccctcacc
gcgttcccctgggagtctcttatggatatgtccagcctcacgctgctcgacttgcacaac
aaccagttgacctcagttcccgcagacgccacaatttattttaaaaacctgacctacctg
gatctgtccagcaacaaccttctgactgttccagctgaggtgctcgccacctggctaaca
gttaaacctgtgcagggcccagagaactccaaaattatacttggtctccatgacaacccc
tggttgtgtgactgccgcctgtatgacctggtccagttccagaagttgccaacgttctct
gtggcattaatcgacacacgcctccgctgtgcagctcccgagagcctgtcaggtgttctg
ttcagcgatgccgagctgcggaggtgccaggcgccacgcgtccacacagcggtggcacac
gtccgcagcgccgtgggaaacaacgtgctgctgcgctgcgggaccattggcgttcccagc
ccggatctggcctggcgcagggcggaagggaaagccctgaacgggacagtccagcaggag
aactccaaggaaggcattatctggtccatcctcaaattcccagccgtgtcctaccgtgac
tcagggaagtatgtctgcaaggccactaactacgccggaaatgcagagaccatcatctcc
ctggttgtctctgatgctcccccaaaacccgacaataacaacaaccaaaccagcatggtt
gctgctactgtaaaaaaaaacaaagtcaacaaacccaacgggatggggaaggcagcatac
caggagaaactggtggataggttagtggttcccacccccaaccctcaacccccacctgct
gttgtggactccagccctgagcctgaaggtgtggtagtgggaagtgtggcagatagagcc
acccctggaccagccaagttgcccagtccagacggactcctggagctggagaagaccaac
ctgagcaacctggcccaggcccagtatgacccggaccggatagttcgctcggtcaaggtg
ttgggcgatacggagaacaccatcaccctgaactggcgggcgcccaaggccaagaacacc
acagccttcagtgtgctctatgccgtcttcggcgaaagagacatgcgcaagatcaacgtg
gcagcaggtcagaatcgggtcttcatcgagggcctggtgcccaagactaagtacattgcc
tgcgtgtgtgtccggggcctgatccccaagaaggagcagtgtgtcatcttctccaccgac
gaggcggccagtgccgctggcacccagaagctcatcaacgtcatcgtgattactgtggct
tgtgtcattgctgtgccactcaccgtaatcgtctgctgtggtgcgctcaagaggcgtatc
cagaagatttggggcaagaagtccaaggacatccaggactcgtatgtgacttttgagacg
ctgtcccccggaaccaaggctaaagggttggagggtgagtacctgaccagactcaaccct
gaggagtccaaccggctgctgtcggcccgatccagtctggactctgaggccacagcaaag
atagagggtcagcccaacgagtacttctgctga
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