Oncorhynchus nerka (sockeye salmon): 115106413
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Entry
115106413 CDS
T07952
Name
(RefSeq) transcription factor Sox-9-A-like
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115106413
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115106413
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115106413
NCBI-ProteinID:
XP_029484986
LinkDB
All DBs
Position
LG23:7967175..7970630
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AA seq
496 aa
AA seq
DB search
MNLLDPFLKMTDEQDKCLSDAPSPSMSEDSVGSPCPSGSGSDTENTRPSENGLLMGPDGP
LVEFKKDDDDKFPVCIRDAVSQVLKGYDWTLVPMPVRMNGSSKNKPHVKRPMNAFMVWAQ
AARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPR
RRKSMKNGQSESDDGSEQTHISPGAIFKVLQQADSPASSMGEMHSPGEHSGQSQGPPTPP
TTPPTKTDIQVGKVDLKREGRPLHEGTGRQLNIDFRDVDIGELSSDVISHIETFDVNEFD
QYLPPNGHPGAPGTATGQVSYTGTYGISSSVVSQAAGGATGHSWMTKSQQQQQQQQHSLT
TLGSGGEQGQNQRTPTHIKTEQLSPSHYNDQQSSSPPQHVNYGSFNLQHFSSSSYPSITR
GQYDFSDHQGGTNSYYSHTAGGQGSGLYSFSSYMSPSQRPMYTPIADTTGVPSVPQTHSP
QHHWDQQPVYTQLSRP
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaatctactcgaccccttcttgaaaatgacagacgaacaagacaaatgtctctcagac
gcaccgagtccgagcatgtcagaggactctgtgggatctccgtgcccgtccgggtctggc
tccgacaccgagaacaccagaccgtcagagaacggactgctgatgggtccggacggtccc
ctcgtcgagttcaagaaggacgacgatgacaaattccccgtatgcatccgcgacgcggtg
tcccaggtcctgaaaggctacgactggaccctggtgccaatgccagtccgaatgaacgga
tctagtaagaacaagccccacgtcaagagaccgatgaacgcgtttatggtttgggcgcaa
gccgcccggagaaagctggctgatcagtacccgcatctccataacgctgagctgagcaaa
actctggggaaactgtggaggctactcaatgagggtgagaagcgtccgttcgtggaggag
gcagagcgattgagggtacagcacaagaaagaccaccccgactacaagtaccagccccgg
cggaggaagtccatgaagaacggacaaagcgagtctgatgacggcagcgagcagacgcac
atatcgccaggcgcgatcttcaaggtgctccagcaagctgactctccagcctctagcatg
ggagagatgcactcccccggagaacactccggccagtcccaagggccccccacccctcct
accaccccccctaccaagacggacatccaggtgggcaaggtggacctgaagcgggagggt
cgccccttacatgaaggcacgggtcgccagctcaacatcgacttccgggacgtggacatc
ggcgagctgagtagcgacgtcatctctcacatcgagaccttcgatgtcaacgagtttgat
cagtacctgcctcccaacggtcacccaggtgctcctggcactgccactggccaagtctcc
tacaccggtacctacggcatcagcagctctgtggtcagccaggcagcagggggtgccaca
gggcacagctggatgaccaagagccagcagcagcagcagcagcagcagcactccttgacc
acactgggtagtggaggggagcagggccagaaccagaggacccccacacacatcaagaca
gagcagctgagccccagccactacaacgatcagcagagctcctcccctccgcagcacgtc
aactacggctccttcaacctgcagcacttcagctcgtcctcctacccctccatcacccgg
ggccagtatgacttttctgaccaccagggcggcaccaactcctactatagccacacagcc
gggggccagggctcagggctctactccttcagcagctacatgagccccagccagaggccc
atgtacacccccatcgcagacacaactggggtgccctccgtaccccagacccacagtccc
cagcatcactgggaccagcagccagtgtacacacagctctcccggccctga
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