Oncorhynchus nerka (sockeye salmon): 115106428
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Entry
115106428 CDS
T07952
Name
(RefSeq) transcription factor Sox-8-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115106428
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115106428
SSDB
Ortholog
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GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115106428
NCBI-ProteinID:
XP_029485006
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Position
LG23:8750580..8753781
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AA seq
475 aa
AA seq
DB search
MTEENSKSFNNHPCSPTGTASSMSQDDSDSDVPSSPTGSDGQAPRHSPGDGITPKLDTGE
EDNRFPACIRDAVTQVLNGYDWSLVPMPTRGDRALKNKPHVKRPMNAFMVWAQAARRKLA
DQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDYPDYKYQPRRRKSTKP
GQSDSDSGAELAHLHPGQMYKAEPGLARPTSMGDGQHHLERTSQPHGPPTPPTTPKTELH
LGVKHEGRHPLDGGRQNIDFSNVDISELSTDVISNMEAFDVHEFDQYLPLNGHGSADAPP
NHGQGGQGPNPPSGSLSSSYGHSHSNASPWGPKGPGAGSAPPSSSSSSSNSDSLHHRTQI
KTEQLSPRHYSSQQSHSTPPPHPDYTPLNSGSCPSSAASSSSSSLPSPQCDYADLQSPSY
YSAYTSYPAGLYPYPYFHSSRHPYGSPLINSLAIPPPHSHSPNWEQTVYSTLTRP
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggaaaatagtaagtcgttcaacaaccatccatgcagtccaacgggaactgcc
agctcgatgtcgcaggacgactcggattcggacgtcccgtcctctccaaccggctccgat
ggacaggcgcccaggcactcacccggcgacgggattaccccaaaactggacaccggcgag
gaggataaccggtttcccgcgtgcatccgagacgcggtgactcaggtgctgaacggatac
gactggtcgctcgtaccgatgcctacacgaggagaccgagctctgaaaaacaaaccccat
gtgaagcggccaatgaacgcgttcatggtgtgggcgcaggcggcgcgaaggaaactagcg
gaccagtacccgcatctccacaacgcagaactcagcaagaccttggggaagctatggcgc
ctgctctctgaaagcgagaagaggccatttgtggaggaggcagagagactgagggtccaa
cacaagaaagactaccctgactacaagtaccaaccacggagaaggaagagcaccaagcca
ggtcagagtgactcggactccggggctgagctggcccacctccacccgggccagatgtac
aaggctgaacctggtctggccagaccgacctccatgggggatggacaacatcatctagag
cggacaagccaaccacatggaccccccacaccccccaccacccccaagacagagctgcac
ctgggggtgaaacacgagggccggcaccccctggacggtggtcggcagaacatcgacttc
agcaacgtggatatctcagagctgagcactgacgtcatcagcaacatggaggccttcgac
gtccacgagtttgaccagtacctgccactcaacgggcatggctctgccgatgcacctccc
aaccacgggcagggggggcaaggacccaaccccccctctgggtccctaagctcctcctat
ggccactcccacagcaatgcctcgccttggggtcctaaagggccgggagcggggtcggca
cccccttcttcctcctcgtcctcaagtaacagcgatagccttcaccacagaacgcagatc
aaaacggagcagctgagtcccaggcactacagcagccagcagtcccactccaccccgcca
ccccaccccgactacacccccctcaactccgggagctgcccctcctctgcagcctcctct
tcctcctcctccttgcccagcccccagtgtgactatgcagacctccagagccccagctac
tacagtgcctacaccagctaccccgcaggtctctatccgtacccctacttccactcctct
cgccacccctacggcagcccgctcatcaacagcctagctatccctccaccccacagccac
agcccaaactgggagcagactgtctattccacactcaccaggccttag
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