KEGG   Oncorhynchus nerka (sockeye salmon): 115106430
Entry
115106430         CDS       T07952                                 
Symbol
rnps1
Name
(RefSeq) RNA-binding protein with serine-rich domain 1 isoform X1
  KO
K14325  RNA-binding protein with serine-rich domain 1
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03013  Nucleocytoplasmic transport
one03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    115106430 (rnps1)
   03015 mRNA surveillance pathway
    115106430 (rnps1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115106430 (rnps1)
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     115106430 (rnps1)
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_7 RRM_3 RRM_occluded Nup35_RRM_2 KdpD PI3K_1B_p101 CLEC16A_C
Other DBs
NCBI-GeneID: 115106430
NCBI-ProteinID: XP_029485009
LinkDB
Position
LG23:complement(8797114..8803364)
AA seq 302 aa
MKQNNAFCEGGPSLPCCVTENVIRAPSPVRRKEHMDDKAKERGKEKMGATKEKAEKDRGR
EKEKGRKRRSSTGSSRSSSSSSSGSSSGSSSGSSSSSASSRSGSSSSRSSSSTSSGSPSP
SRRRHDNHRRSRSKSKSSVKKDDKERRKRSPSPRPTKVYLGRLTRNVVKEHIQEIFSSYG
KIKMIDMPVDRLRSHLSKGYAYVEFENADEAEKALKHMDGGQIDGQEITATAVLARRVIR
PPPRRPSPPRRMPPPPPMWRRTPPRLRRSRSPRRRSPVRRRTRSRSPGRRRHRSRSSSNS
SR
NT seq 909 nt   +upstreamnt  +downstreamnt
atgaagcaaaacaacgctttctgcgaaggcgggccgtcacttccgtgttgcgttacagaa
aatgttatccgggcgccttctccagtgaggaggaaggagcatatggatgacaaggcaaaa
gagcgagggaaggagaaaatgggtgccaccaaggagaaagctgagaaggacaggggcagg
gagaaggagaagggacgcaagcgacgaagctccactgggagcagcaggtccagctccagt
agcagctctggctccagctccggttcttccagcggctccagttcctcctctgcctcaagc
cgctccgggtcttccagctcccgatcttctagctcaaccagctccgggtcgcccagcccc
agtcgccgccgccacgacaaccaccgccgctcacggtccaaatccaagtcatcagtgaaa
aaggatgacaaggagaggcgtaagaggagccccagcccccgaccaaccaaggtgtacctg
ggccgcctcaccagaaatgttgtcaaggaacacatccaggagatcttcagctcctatggc
aaaatcaagatgattgacatgcctgtggacaggctccgctcacacctgtcaaagggctat
gcctacgtggaatttgagaatgccgatgaggccgagaaggctcttaaacacatggatgga
ggtcagattgacggacaggagatcacagccactgccgtgctggctcgtagggtaatacgc
ccgccccctcgcaggccctccccccctcgcaggatgcccccaccacccccgatgtggcga
cgcacccctccacgcctgagaaggtctcggtcaccacggagacgctctccggttcgccgc
aggactcgttcgcgctcacccggtcgcagacgccaccgctcacgctccagctccaattcc
tcccggtag

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