Oncorhynchus nerka (sockeye salmon): 115106579
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Entry
115106579 CDS
T07952
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
one03037
]
115106579 (ift140)
Cilium and associated proteins [BR:
one03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
115106579 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
Beta-prop_WDR19_1st
WD40_CDC20-Fz
Beta-prop_EML_2
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_HPS5
TPR_GEMI5
TPR_IFT80_172
WD40_Prp19
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Clathrin
Beta-prop_WDR75_1st
RPN7
tRNA_int_end_N2
Consortin_N
Rax2
TPR_2
Motif
Other DBs
NCBI-GeneID:
115106579
NCBI-ProteinID:
XP_029485310
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All DBs
Position
LG23:13478568..13534089
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AA seq
1460 aa
AA seq
DB search
MAVYFDHRIEAPESSGGPSQVAWHPTQPVLAVASNSPTTGGNIDLYLQQGEHVGSCHVDR
PFQPTVLCWHPTKPLLALGWETGEVLLLTHPSGEQTPLPATHTACITLLEWSSSGSRLIT
GDQMGVLALWKVDARGRLQGSHIVKHDYTKPLTYCIFRPAPPGEDVALLARAAVGGDESA
LDMFNWRKAGNGPPLKMGPQEGLVFYVGTADGKVHCVDEHGRSSPVLSVDGSIQKLFYLK
RREVLAVVTETLLLSQYTLGPEGGAQELMKVKLSGKGGQSADIVSTETGLLITATGEQVI
RLWDLERDDNYVLSLDESLGFEKGEVLNCVSYCTAKEILAAGTNRGRIALWRMVSQPNTR
TDTKAQWKLQTPTEIEGNVTQLQWGSNLNLLAANSVTTVLILCEHVMSAHFGQQVAAVQL
TPSQLSLTMFNTNSHLTLRSDMHIKGVCVTKDTVTVWNGKQVTVYEPSGATLRNTGSFLC
ESQVLAVHDENIYTVEPNRVQVRTPQGTVKQLLAFSEAEGNPVLLSVCQGYLVVGTDTAH
IKVFDLTRREAKAHCSAKNLVDLTPNLGALKSVKCNANGNQVSILVTQVNGRPDHRMYFY
DVEMDTLSHFDFFTGRPPSGISQADDTERRPLTELSERCPVSHFWDENEPRLFVCETVLV
SSPQMDHLDRVDVLVVTFFCTQEHGLLLQDSYPKPAGLQALLALDVPYYYFTCKPGERDP
ETEEAQAPDPTQSPSLAQASAPAAQSPHMVSRRALRDFQGLENCEKATRDAMLNFSFYLT
IGNMDEAFKSIKLIKSEAVWENMARMCVKNRRLDVARVCLGNMGNARAARALREAEAEPE
LEARVAVLALQLGMLEDAEKLYKSCGRFDLLNKFYQASGQWQKAVETAETHDRIHLRTTY
YSYAKYLEAIGDKSMALVFFEKSDTHRFEVPRMLLDDALSLEIYVNKMKDKNIYKWWAQY
LESQSDMESALRYYEYAQDFLSLVRVHCYLGNIQKASEIANETGNRAASYHLARQYESQE
EIKQSVHFYTRAQAYNNAIRLCKENGLDDQLMNLALLSNPEDMMEAACYYEEKGSHMDRA
VMLYHKAGHFSKALEVAFATEQFAALQLIAEDLDETSDPALLARCSDFFIKHGQYEKAVE
LLVAAKKYHEALQLCLDQSLTITEDLAESMTVTKESKDLSEEARKELLERIADCCMRQGN
YHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKDPE
IMKNIISFYSKGRALDLLAGFYEACAQVEIDDYQNYEKALGALTEAYKCLSKAKGHSPDE
HEARMAELQHKITLVKRFVQARRLYEEDPGEAVRLCEALLEEPDLDPAVRIGDAYGFLVE
HHCQRGSFQVAYRKLEDLQKLLPSLNISYYVSQGSLDALQRAVGVPLGRGQLSGRGDRRD
SGGEEDEVEEDEALVSHQGD
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtactttgatcaccgtatcgaggcccctgagtcaagcgggggcccctctcag
gtggcatggcatcccactcagcctgtactagcagtggcctccaacagccccaccaccggg
ggcaacatcgacctttacctccaacagggtgagcacgtagggagctgccatgtggaccgt
cccttccagcccacggtgctgtgttggcaccccaccaagcctctgctggctctgggctgg
gagacaggcgaggtgctgctgctcacacacccctctggagagcagacgccgctgcccgcc
acacatactgcctgcatcaccctgctggagtggagcagctccggcagccgcctgatcacc
ggggatcagatgggagttctcgcgttatggaaggtggacgcccgaggaagactacaggga
agtcacatagtgaagcacgactacaccaagcccttaacctactgtatcttcagaccagca
cccccgggagaggatgtggcattgctggcgcgggctgcagtgggcggggacgagagtgcc
ctggacatgttcaactggaggaaggctgggaatggaccgccgctcaagatgggtcctcag
gagggtctggtgttctacgtcggcacggcagacggcaaggtgcactgtgtggatgagcat
ggcaggagcagcccagtgctcagtgtggacggctccatccagaagctcttctatctgaag
aggagagaagtcctggccgttgtcacagaaacccttttgctgtcacagtacactctggga
cctgaggggggagcccaggagctcatgaaggtgaagctgagtggaaaaggtggccaaagc
gcagacatcgtttcaacagagacaggcctcctcatcacagctacaggggaacaggtcatc
aggctctgggacttggagagggatgacaactatgtgctttctctggatgagagccttggc
tttgagaaaggagaggtgttgaactgtgtctcctactgcacagccaaagagatcctagct
gcaggcaccaacagggggcgtatagctctgtggaggatggtgagccagcccaacaccagg
acagacaccaaggcccagtggaaactacagacacccacggagatcgagggcaatgtcacc
cagcttcagtggggctccaacctgaacctgctggctgccaacagtgtgaccacagtgctg
atcctctgtgagcacgtcatgtctgcccacttcggccagcaggtggcagcggtacagcta
accccatcccagctcagcctcacaatgttcaacaccaactcccacctcaccctgcgttcc
gacatgcacatcaagggtgtctgcgtcaccaaggacacagtcacagtgtggaacgggaag
caggtcactgtgtacgaaccctcgggggcaactctacgcaacacaggctctttcctgtgt
gagtcccaggtcttagctgtgcatgatgagaatatctacactgtggagcccaatagagtc
caggtccgcacaccacagggcacagtgaagcagctactagccttctctgaggctgagggc
aaccctgtgctgctcagtgtgtgtcagggctacctggtggtgggaacagacacagctcac
atcaaggtctttgacctcactcgcagagaagccaaggcccactgcagtgctaagaaccta
gtggacctgacccctaatctgggagccctgaaatcggtcaagtgtaacgccaacggcaac
caagtcagcatcctggtcactcaggtgaatgggagacctgaccacagaatgtacttctat
gacgtagagatggacacactctctcactttgacttcttcactggtagaccgcctagtggc
atctcacaggccgacgacacagaaagacggccactgacagagctgagcgagagatgtcct
gtgtctcatttctgggacgagaacgagcctcgtctgtttgtgtgtgagacggtactggtc
agctctccccaaatggaccatctggacagggtggatgtgctcgtggtgacgtttttctgc
actcaggaacatgggctcctcctgcaggactcctaccccaaaccagccggcctgcaggcc
ctactggccctggacgttccctactactacttcacctgtaagccaggtgagagggatcca
gagacggaggaggcccaagctccagaccccacccaatctccatccctggcccaggcctca
gccccggctgcccagtccccccacatggtgtccagacgagccctccgggactttcagggc
ctggagaactgtgaaaaggccacccgcgatgccatgctcaactttagcttctacctgacc
atcggaaacatggacgaggccttcaagtccatcaagctcatcaagagtgaggcagtatgg
gagaacatggcgaggatgtgtgtgaagaaccggcgtctggacgtggcacgggtgtgtctg
ggcaacatgggtaatgccagggcggcacgggcgctacgggaggccgaggccgagcctgaa
ctggaggccagggtagcagtactggcccttcaactgggcatgctggaggatgcagagaag
ctgtataagagctgcggccgcttcgacctcctaaacaagttctaccaggcatctggccag
tggcagaaggccgtggagacagcagagacccacgaccgtatccacctcaggaccacttac
tacagctatgccaaatacctggaggccatcggagacaagagcatggccctcgtgttcttt
gagaagtctgacacccaccggttcgaggtacccaggatgctcctagatgatgcactgtct
ctggagatctacgtcaacaaaatgaaggacaaaaatatctataagtggtgggctcagtat
ctggagagccagtcagacatggagtcagcactacgctactacgaatacgcacaggacttc
ctctctctggtccgcgtgcactgctacctggggaacattcagaaggcgtcggagatagcc
aatgagacggggaaccgtgctgcctcgtaccacctagcccggcaatatgagagtcaggag
gagatcaaacagtccgtccacttctacacacgagctcaggcctacaacaacgccatccgc
ctctgcaaggagaatggtctggatgaccagctgatgaacctggctctcctcagtaaccca
gaggacatgatggaggctgcctgttattacgaggagaagggttctcatatggaccgtgct
gtcatgctctaccacaaggctggtcatttctccaaggctctggaggtggcctttgctaca
gaacagttcgctgcactgcaactcatagcagaggacctggatgagacatctgacccggcc
ctgctggcccgctgctctgacttcttcatcaaacacggccagtatgagaaggctgtggag
ctgcttgtggccgccaagaagtaccacgaggctctgcagctgtgtctggaccagagcctg
accatcaccgaggacctggctgagagtatgaccgtgaccaaggagtccaaagacctctca
gaggaggcccgcaaagagctgctggagagaatagctgactgctgcatgcgccagggcaac
taccacctagccaccaagaaatacacacaggctggcaacaagctaaaagccatgcgggcg
ctcctgaagtcaggggacacagagaagatagtgttcttcgctggcgtgtcacgtcagaag
gagatctacatcatggccgccaactacttgcagtctctggactggcggaaagatccggaa
atcatgaagaacattattagcttctactccaaaggcagggctctggacctgctagctggc
ttctatgaagcttgtgcccaggtggagatagatgattaccagaactatgagaaggcactg
ggtgctctgacggaggcctataagtgcctttctaaagctaagggccacagcccagacgaa
cacgaggctcgcatggctgagctgcagcacaagatcactctggtcaagaggtttgtccag
gcacgcaggttgtatgaggaggacccaggggaggcggtgcgtctgtgcgaagccctgcta
gaagagccagacctggaccctgctgtcaggataggagatgcatacggcttcctggtggag
catcactgtcagcggggcagcttccaggtggcctaccgcaagctggaggatctgcagaag
ctgctgccctctctgaacatcagctactacgtgagccagggcagcctggatgccctgcag
agggcagtgggtgtacccctgggccgggggcagctctcaggcaggggagaccgacgcgac
agcgggggagaggaagacgaggtggaggaggacgaagccctggtgtcccaccaaggggac
tga
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integrated database retrieval system
