Oncorhynchus nerka (sockeye salmon): 115106890
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Entry
115106890 CDS
T07952
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115106890
03015 mRNA surveillance pathway
115106890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115106890
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115106890
mRNA cycle factors
P-body specific factors
115106890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
115106890
NCBI-ProteinID:
XP_029485938
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All DBs
Position
LG23:complement(32393064..32413129)
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AA seq
1300 aa
AA seq
DB search
MPAEGKRSLNMDEKEVSSFSNKEKDRDADRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEQERKVQEKEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKCKDKEEAAAKEAKEAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKL
VRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINIETKN
KTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDSHLRT
SVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLS
KVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIH
VVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNPD
GGPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSA
EHQFPIDIDYMISDTLELLRPKMRLCISLEDSARQVTELEREFLVKLGLAMDGQKDGRPS
SAMGSEGEALDEDDDDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEEENTD
YLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQ
LDVAIPLQLKSQLKKGPGGPVCSGEGDADISDTMQFVMLTRKGNKQQFKILNVPLSSHLA
ANHFNHQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPRYQHP
KGAPNADLIFKTGGRKQETKQERIERHEKRDRQERQEKHE
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagaccgggatgctgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatatcggtaaggctgcagaggaaaagaggagg
cggcttgaggaggacaaaagaaagaaggaagaaaaagagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gagcaggagaggaaagttcaggagaaggaggccaagagacagcgtgaagaggaggcagct
caactcaaagagaaggaggagggccaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagcttcgcgtccgcaaccagaacgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacagccttcgtcaagaagctgcgc
acgctcaccgaacagcagcgcgatgccctctccaacgactttggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctctgtggtggaggccaagctgaagatctctgacgtg
ggctgcgccgtgcacctgtgctccctcttccaccagcgctacgctgaattcgccccactg
ctcctccaggcctggaaaaggcactttgaggcgcgcaaggaagagaaggcacccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccatcgtaggcctgttcacc
gacaaggagggcctgtcgctcatctacgagcagctgaagagcatcatcgggacggaccgc
gagacacacacgcatgtgtcagtggtcatcagcttctgtaagcactgcggggacgacatt
gcgggcctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagcgagatcattaacacggagaagcagcagccctttcagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacattgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacaggcacaagcagcat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagagcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagtgcaaggacaaagaggaggctgctgctaaagag
gctaaagaggctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagctcgcc
aaaaaactgttggacgagcaagaacaagaggatgaggaggcaagcaccgggtcccacctg
aagctcattgtggacgccttcatccagcagcttcccaactgtgtcaacagagacctcata
gacaaggctgccatggatttctgcatgaacatgaacacaaagtcaaacaggaggaagctg
gtccgagctctcttcaccgttcccagacaaaggttggatctgctgcccttttactcccgt
ctggtggccacccttcacccctgcatgtcagatgtggccgatgacctgtgctccatactc
aaaggagacttcaggtttcatatccggaagaaggaccagatcaacattgaaacaaaaaat
aaaactgtgaggtttatcggggagctggccaagttcaagttgttctcaaaaacggacact
ctgcattgtctgaagatgctgttgtcagacttctcccatcaccacatagagatggcctgc
accctgctggagaccagtggacgcttcctcttcagatcccccgactcccacctccggacc
agcgtccttctggagcaaatgatgcgtaagaagcaggcgcagcacctggatgctcgctac
gtgaccatggtggagaatgcctactactactgcaaccccccgcccatggagaagactgtc
aggaagaagaggcccccgctgcaggagtacatccgcaaactgctctacaaggacctctcc
aaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctggcaggacccagag
tctaaaggctacctgatctgctgcatggtcaacatctggaatgtcaagtacaacagcatc
cactgtgtggccaacctgctggccggccttgtggcctaccaggaggacgtgggcatccac
gtggtggacggggtcctggaggacatccgcctgggaatggaggtgaaccagcccaagttc
aaccagcgtcggatcagcagtgccaagtttctgggggagctctacaactaccgcatggtg
gagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggggtgaacccggat
ggcggccccagccccctggacccccccgagcacctgttccgcattcgcatggtctgcacc
ctgctggacacctgcggacagtactttgaccgcggctccagcaagaggaagctggactgc
ttcctcatctacttccagaggtatatctggtggaagaagagtgtggaggtgtggagtgca
gagcaccagttccccatcgacattgactacatgatcagtgacaccctggagctgctccga
ccaaagatgaggctctgtatctccctggaagactccgcacgacaggtcaccgagctggag
agggagttcctcgttaaactgggactggccatggatgggcagaaggacggccggccctcc
agtgccatggggagcgaaggcgaggctctagacgaggatgacgatgatgacgacgaagag
ggaggggcggacacagaggaacagtctggcaatgagagcgagatgaacgagccagaggaa
gaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggaggagaacaccgac
tatctgaccgactccaacaaggagaacgagacagacgaggagaacaatgaggtgaccatc
cgtggtggcggtctgaagcatgtggcatgtgctgaggatgaggacttcatccaggctctg
gacaagatgatgctggagaacctgcagcagcggagcggggaggcggtgaaggtgcaccag
ttggacgtggccatccccctgcagctgaagagccagctgaagaaaggtcctggcggaccc
gtctgctctggagagggggacgcagacatctcagacaccatgcagtttgtcatgctcaca
cggaagggcaacaagcagcagtttaagatcctgaacgtgcctttatcctcccacctggct
gccaaccacttcaaccaccagcaggcggagcaggaggagaggatgaggatgaagaagctc
actctggacatcaacgagagacaggagcaagaggactaccaagaaatgatggcgtctctg
gcccagcggcccgctcctgccaacaccaaccgggagcggcggccgcgctaccaacacccc
aaaggggcacccaacgccgacctcatcttcaagaccggaggaagaaagcaggaaacaaag
caggagagaattgaaaggcacgaaaagcgtgacagacaagagaggcaagagaaacacgag
tga
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