Oncorhynchus nerka (sockeye salmon): 115107002
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Entry
115107002 CDS
T07952
Name
(RefSeq) caprin-2-like isoform X1
KO
K18744
caprin-2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115107002
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
115107002
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Gene cluster
GFIT
Motif
Pfam:
C1q
Caprin-1_dimer
Caprin-1_C
Motif
Other DBs
NCBI-GeneID:
115107002
NCBI-ProteinID:
XP_029486160
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Position
LG23:37570558..37578498
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AA seq
956 aa
AA seq
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MNPVGDTKCAHIGQDLNMVQLSPSPARDASPSPECSEKGRQGSPKTGSPKIGSHGGLSPL
QLALGTSIPNYQGYESYIEDGLICLKHKIRNLEKKKIKLEDYRKRLKHGESLNQDQIDAV
EKYDEVIHNLQFAQELHKTLGGLTQELLKAQKKALRKEQMAKQEVEKRRLCVVLQVKYLL
QTLLQHEHIRKDLLSARNPQLQVAELQSLLELAELLGVKRDNNVSLEEQMESAALVYLDL
LEGNNKAVAGTTYKVLKAKLAKLMDCGYFDCVPPPPSKSPKEVEIPMTKKTVSETASLST
LMMSNKKDVPSREFLNRHYLPDTDPNGCRDTPVTPNWKAEFQAMKEQEPPDSWDMESDST
QPVIQNPWRGAAVFISKVPVTTKKDNAEPKQRRAKSKRERDATAALRVDTPVEVFNSQSS
LPKDPILLKDPILRKQQLEDLMTKIRGSFSFMQDSLLSGEGSPTNGHPRLGRHASGSPSP
LVQRESRRSPVDHLPKTLHSTPLPSKLLPVDDEPSLTNGDGGCLESCDLDLTTEDLAHVI
AIDPCLLLSESETACPSPTAPPPSARTPISESGKQSPCNGVVPPCTPTPTQGQPFSTPPS
RRTLSMAPSVPFQTMHSVFKVNAPLLPTGDFKSDIIPYLDSGNDLCYVTTSTQTPPDFAP
LEDEHLQSVNQSECLVGSGGQIFLSPSQSGGTMGRSDQSYYRGSVRGIARGGKGLAHSYF
RSSGGHRGGSFIPQAHLYGARDTGYQHSYRRGGGNAGQRHNNSGWSDSSQVSSPDREGNY
SLVDSAHGDSLQGVGMDLTPQVTPHAPHTLMHVPMYPLPQHPQPLRVAFTAARTANYTPG
TLDQPITFDQLHSNLGEMFNTNVGRFICPANGTYVFLFHILKLAVNVPLYVNLMRNDEVM
VSAYANDGAPDHETASNHSILQLYQGDQVWLRLHRGSIYGSSWKYSTFSGFLLYQD
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgtcggcgacactaaatgcgcacacattggccaggatttgaacatggtgcag
ctgtctccatccccagcccgggatgcgtctccttcacctgagtgctccgagaaggggagg
caggggagcccaaagacaggtagccccaagattggctcccatggtgggctgagtcctctc
cagctagcactgggaacctccatccccaactaccagggctacgagagttacatcgaggac
ggcctcatctgcctcaagcacaagatccgcaacctggagaaaaagaagattaaattggaa
gactacaggaagcgtttgaaacacggggaatcactcaatcaagaccagatagatgcagtg
gagaagtatgacgaagtgatccacaacctgcagtttgcccaggagctgcacaagaccctg
gggggcctaacacaggaactgctaaaagcccagaagaaggcgttgaggaaggagcagatg
gccaagcaggaggtagagaagaggaggctgtgtgtagtgctgcaggttaagtacctcctg
cagaccctgctgcagcacgagcacatcaggaaggacctcctctctgcccgcaacccccag
ctccaggttgcagagctacaaagcctgcttgagctcgctgaactactgggggtgaagagg
gacaacaatgtgagtttggaggagcagatggagagcgcagccctggtctacctggacctg
ctggaggggaataataaagctgtagccggaaccacctacaaggtcctgaaggctaagttg
gcgaagctgatggattgtgggtactttgattgtgtaccgccgcctccgagcaagagtccc
aaggaagtagagattcccatgaccaagaagacggtgtctgaaacagccagcctctctacc
ctaatgatgtcaaacaaaaaagacgtgcctagcagagagtttcttaacagacactacctg
cctgacacagaccccaatgggtgtcgagacactcccgttactccgaactggaaggctgag
ttccaggccatgaaggaacaggagccaccggactcatgggatatggagtctgactccact
cagcctgtaatccagaatccatggagaggggcggctgtgtttatctccaaagtgccggtt
actaccaagaaagacaatgctgaacccaaacagagaagagcgaagtctaaaagggagcgg
gacgccacagctgcacttcgtgtggacacccctgtggaggtgttcaactcccagtcttcc
ttgcccaaggaccccatcctgctcaaggaccccatcctgcgcaagcagcagctggaggac
ctgatgaccaagatcagaggctccttcagcttcatgcaggattctcttctgagtggtgaa
ggatcgcccactaacggccatcctagactgggccggcatgcctctggatccccctctcca
ctcgtacagagagagtcaaggagaagcccagtggaccatctccccaaaacactgcattcc
actccattgccttctaaactcctccctgttgatgacgaacccagtctgaccaatggagac
gggggttgtctagagagctgtgacctggacctgactacagaggacctggctcacgtcata
gccattgatccatgtctgctgctgtctgagagtgagactgcctgcccctctcctacagct
cctcctccctctgctcggactcccatctctgaatctgggaagcaatccccctgtaacggg
gtagtgcctccttgtaccccaacccccacccaggggcagccgttttctacccctcccagc
agacgtacactcagcatggccccctctgttcccttccagaccatgcattcggtattcaag
gtgaatgcccccttacttccgactggagactttaaatctgatattatcccctatttggac
tccggcaacgacctgtgctatgtcaccaccagcacccagaccccaccggattttgctccc
ctggaggacgaacacctacagtcggtgaaccagtctgaatgtctggtgggtagtggtggg
cagatcttcctgtcccctagccaatcaggtggcaccatgggccgttctgaccaatcatac
tacagaggatctgttagaggtattgcacgtggtggcaaggggctggcacactcctacttt
cgctcttctggtgggcacagaggaggaagcttcatcccccaggctcacctgtacggtgct
cgggacactggctaccagcacagctacaggcgtggtggaggcaatgcaggacaaaggcac
aataatagtggttggagtgactcctcccaggtgagcagcccagaccgggagggcaactac
tccctggtggactctgcccacggcgactcgctgcagggtgttggcatggacctcaccccc
caggtgacccctcatgccccccacaccctgatgcacgtacccatgtacccgctcccccag
catccccagcccctccgcgtggccttcacagcagcccgcacagccaactacaccccgggc
accctggaccagcccatcacctttgaccagctccacagcaacctgggggagatgttcaac
accaacgtgggtcgtttcatctgcccagccaacggcacctacgtcttcctcttccacatc
ctcaagctggcggtcaacgtgccgctctacgtcaacctgatgcgcaacgacgaggtgatg
gtgtctgcgtacgccaacgacggggctccggaccacgagacggccagcaaccactccatc
ctgcagctgtaccagggagaccaggtgtggctgcggctgcaccgcggctccatctatggc
agcagctggaagtacagcacattctctggcttcctgctctaccaggactga
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