Oncorhynchus nerka (sockeye salmon): 115107035
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Entry
115107035 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase Hakai-like
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115107035
04131 Membrane trafficking [BR:
one04131
]
115107035
04121 Ubiquitin system [BR:
one04121
]
115107035
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115107035
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
115107035
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
115107035
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115107035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_Hakai
zf-C3HC4
zf-RING_UBOX
zf-RING_5
P53_TAD
zf-C3HC4_3
DZR
zf-C3HC4_2
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
115107035
NCBI-ProteinID:
XP_029486244
LinkDB
All DBs
Position
LG23:39395847..39400494
Genome browser
AA seq
487 aa
AA seq
DB search
MDQIDNDLQGTDGSGSLGGPDVRRRIPIKLISKPTIRSKPAPRTQRPMGRQPSNPQAGDE
ESFSFKQEERFDCGTKAGDVFASQRKFPQQMFWDFKLNLIGEKDDIPAHFCDKCGLPIRI
YGRMIPCKHVFCYECALLHEKKGDKMCPGMQLFSCTDPVQRIEQCLRGSLYMCSIVKGCK
RTYLSQRDLQAHINHRHMRAAKALASRQDALHLPPSTEVPDRFRVPPPHLPKTQGHLPPP
LQHGGHDPYGQPLPASHDAPPLSQETFRIATVTTRARSNLITVPIQDDSTSSSTSSSRDP
LPPGPGPAPPPHHHPGDYPGQPVVSHPHHMMAPPQQHYGPPPPPPPPINHPMQHPPQGSG
TPHMVYNQAGPPPPMSNAPPPITPPPGHIMGQMPTYMNHPPPGPPPQHGGPPVNAPPPHH
YNPNSMQQFPEDQGTLSPPFNQQGGLSPGMWPAPRGPHPPRMQGPPPQGQMPGPHHPDQS
RYRPYYQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaattgacaatgacctgcaaggcacggacggctcggggagtcttgggggccct
gatgtccgcagacgcatccccatcaaactcatctccaaaccaaccatcaggagcaaacct
gctccccggacacaaagacccatgggcaggcagccctccaacccccaggccggggatgaa
gagagttttagcttcaagcaagaggagaggttcgactgtggtaccaaggctggggatgtg
tttgcaagtcaacggaagttcccccagcaaatgttttgggactttaagttgaatttgata
ggtgaaaaggatgacattccagcacacttttgtgacaagtgtggtctgcccataaggatc
tatggacgcatgattccatgcaaacatgtattctgttatgagtgtgcgttgctccacgag
aagaagggagacaagatgtgcccaggtatgcagctcttcagctgcacagacccggtccag
cgcatcgaacagtgtctgcggggctccctctacatgtgcagcattgtgaagggctgcaag
cgcacctacctttcccagcgtgacctgcaagcccacatcaaccaccgccacatgagggca
gccaaggctttggcaagccgccaggatgccctgcaccttcccccatccacagaggttcct
gaccgcttccgcgtgcccccgcctcacctgcccaagacccaagggcacctcccgccccct
ctccaacacgggggtcatgacccctacggtcagccactaccggcttcccatgatgcacct
cctctttcccaggagaccttccgcattgccacagtaactacacgcgcacgcagcaacctc
atcaccgtgccaatccaggatgactccacttcttcctccacctcttcctcccgtgaccct
ctccctcctggcccgggccctgctccacccccacaccaccatcctggggactaccctggt
cagcctgtagtgtcccatccccaccacatgatggcaccaccgcaacagcactacggccct
ccacctcctccccctccacccatcaaccaccccatgcagcacccgccccagggctctggg
acaccccacatggtgtacaaccaggccggccctcccccgcctatgtccaacgcacccccc
cccattacccccccgccaggacacatcatgggtcagatgcccacctacatgaaccaccct
cctccaggccccccacctcaacacggtggtcctccagtcaacgccccccctccccaccac
tacaaccctaactccatgcagcaattccccgaggaccagggcacactcagtccccctttt
aaccagcaagggggtctgagccctgggatgtggcctgcccctagagggcctcatcctcca
aggatgcagggccccccacctcagggccagatgcctggaccccatcaccccgatcagtcc
cgctaccgcccttattatcagtaa
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