Oncorhynchus nerka (sockeye salmon): 115107132
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Entry
115107132 CDS
T07952
Name
(RefSeq) periodic tryptophan protein 1 homolog isoform X1
KO
K14791
periodic tryptophan protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
one03009
]
115107132
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
90S particles
Other 90S particles
115107132
Pre-60S particles
Other pre-60S particles
115107132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
EIF3I
Beta-prop_EML_2
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
WD_LRWD1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
115107132
NCBI-ProteinID:
XP_029486410
LinkDB
All DBs
Position
LG23:complement(42659325..42664996)
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AA seq
502 aa
AA seq
DB search
MSSQITCVGWVKRGVSKETPDKVELSKEELQRIIAEAKEQLGISNSGICLLSERVGEEED
DEGMASGQEQSDEAEAVQGQEPEQDENEAGREEADELAEYGLDRYDEEDSVTANLGDSLA
GLTVFSTNEEDPYITIKDTDQYEREDFQIKPNDNLVISGRAEKDCCNLEIHVYNSEEESL
YIHHDILLPAYPLCVEWLNFDPSPEGTGNYAAVGNMTPQIDVWDLDVVDCLEPAFTLGSK
KASKKKKKSKKAAAEPVEGHTDAVLDLSWNKLVRNVLASGSADKTVILWDLAQGKPATTL
CRHTDKVQTLMFHPFEAQTLISGSYDKSAILYDCRSPDSSHRTWRFSGQVERVAWNHFSP
CNFLASTEDGFVYCLDARSDKPVFTLRAHDGEVSGLDLSSQIRGCLVTSSADKHVKIWDI
LGNKPNLVHTRDMKMGVLFCAACCPDMPFVYAFGGQRDGLRVWDISDVAAVAEVFGNRER
LVATTAPEASSSTSSTADMELS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcagatcacttgtgttggatgggtaaagcgaggcgtttcgaaggaaacacca
gataaggtggagttgagcaaagaggaattgcaacgcattatagcagaggcaaaagaacaa
ttggggattagcaattcaggtatttgtttgctcagtgaacgcgtaggtgaagaggaggat
gatgaaggcatggccagcgggcaggaacagagtgacgaggcagaagctgttcagggacag
gagccagagcaagatgaaaatgaagcaggaagggaggaagctgatgaactagcagagtat
ggtttggatagatatgacgaggaagactctgtgactgccaaccttggtgacagccttgcc
ggcctcacagtgttcagcaccaatgaggaggatccttacattaccatcaaagacacagac
cagtatgagcgagaggactttcaaatcaagcccaatgataacctcgtaatttcaggcaga
gcagagaaggactgctgcaacctggagattcacgtatacaactccgaggaggaatccctc
tatattcaccatgacatactcctgccagcctatccactgtgtgtggagtggcttaacttt
gaccctagtccagaaggcacaggcaattatgcggctgtaggcaacatgacaccgcagatt
gacgtgtgggacctggatgtggtggactgcctagagcctgccttcactctggggagcaag
aaggcctccaagaagaaaaagaaaagcaaaaaggctgcagcagagccagtggaaggtcat
acagacgctgtactcgacttatcctggaacaaactggtccgcaacgtcttggccagtggg
tcagccgacaaaacagtgatcctgtgggatctggcacagggaaaaccggccacaacactg
tgcagacacactgacaaggtccagacgttgatgttccacccctttgaagctcagaccctg
atatcaggatcatacgataagtcggcaatcctgtatgactgccgcagcccggacagcagc
catcgcacttggaggtttagcgggcaggtggaaagggtcgcctggaaccacttctctccc
tgcaacttcctggcgagcacagaggacggctttgtttactgtctggacgcacgctcggac
aagccagtgtttacactaagggcacatgacggagaggtgtcaggcttggaccttagcagc
cagatccggggatgcttggtcacctcgtcagcagacaaacacgtcaagatttgggacatc
ttggggaacaagcccaatctggttcacacccgggacatgaaaatgggggtgctgttctgt
gcagcgtgctgtcctgacatgccctttgtatatgcatttggaggacagagggatggcctg
cgggtttgggacataagtgatgtggcagcagtcgctgaggtgtttggcaatcgggagcgg
ttggtggcaaccacagcgcctgaggcatccagcagcacttcttccacagcagatatggag
ctttcctag
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integrated database retrieval system
