Oncorhynchus nerka (sockeye salmon): 115107174
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Entry
115107174 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1G-like
KO
K04854
voltage-dependent calcium channel T type alpha-1G
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
one04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115107174
04020 Calcium signaling pathway
115107174
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115107174
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115107174
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
115107174
NCBI-ProteinID:
XP_029486465
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All DBs
Position
LG23:complement(3311194..3459834)
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AA seq
1480 aa
AA seq
DB search
MKITPDFDDFIFAFFAVEMVIKMVALGIFGKKCYLGDTWNRLDFFIVLAGMLEYSLNLQN
VSFSAVRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLW
AGLLRNRCFLPENFSLPLSIELETYYHTENDDESPFICSMPRENGMRLCSSVPTLYEXGG
LQCQMDMKSYNSTDNTTCINWNQYYSNCSAGHVNPFKGAINFDNICYAWIAIFQIGSFFM
INLCLVVIATQFSETKQRESQLMREQRIRFLSNASTLASFSEPGSCYDELLKLLVHVIHK
GFRQVAHVCRAMMRRAGMNIAASPPALERERERGSQRKRRKTSRQGSVVATKGAMSVHYL
VHQHHHHHYHYHLVNGSVRGRLGGRGVAGVGGGGGEVEMGSHSNSVGTGRLMLGPLPLPT
SDLNLANLVSSANPALGTGSGNSSSVRSTLHTDCHLEPSTPTLLAPTPFSLAPTPMSRPM
KRNSVPFAGPRPKNYPTLQPSTLMEFRSGSVTTNTISNINLNIPSLPLERGPPSVLDTHT
PTAQLSPHDLSAIGTLDPSFTFDPESCPYCVKALSGESEGTDGNETPGESDSEGVYEFTL
DLHRRDRRDRRDSCQPRKKQRKLGTTVGRVVRAWRLVCDTFRKIVDSKYFGRGIMIAILI
NTLSMGIEYHEQPDELTNALEISNIVFTSLFALEMLLKVLVYGPFGYIKNPYNIFDGVIV
VISVWEIVGQQGGGLSVLRTFRLMRVLKLVRFMPALQRQLVVLMKTMDNVATFCMLLMLF
IFIFSILGMHLFGCKFGSERDGDTLPDRKNFDTLLWAIVTVFQILTQEDWNKVLYNGMAS
TTPVAALYFIALMTFGNYVLFNLLVAILVEGFQTEAPPVSLPSTSPLHDATAVETNQGED
SKSVSEADLSSRSMEDMNGSGKDASGSPVVPINGHVDLKTSLTPPLITHTAATPMPVPKL
PSVVDPAPGYESRHGSNVSMDLACYDKSPTSARSTSPYAPWSSASGWTSRRSSWNSVGRA
PSLKRTKRQSGERRSLLSGEGGSSSEDDEGGGGGTSEGDDVSLCRTDSIVQVPFLYRSAS
IHSSRPPSLGGLRAPERSDCNGKGTPAPGGALAQTQLSLEDNTEDEAAEEEVVGRVARLS
RWLERKQPEWCRKRDTWSLYILPPDSRFRMACNKIISHKMFDHVVLVIIFLNCITIAMER
PRIEAYSVERIFLTLSNYIFTAIFVAEMTVKVAALGWLFGDKAYLRSSWNLLDGLLVMIS
AIDILVSLVSNSSPKILGMLRVLRLLRTLRPLRVISRAPGLKLVVETLMSSLKPIGNIVV
ICCAFFIIFGILGVQLFKGKFFACQGEDVRNVTNKSDCMMANYKWVRQQYNFDNLAQALM
SLFVLASKDGWVDIMYDGLDAVGVNQQPQLNHNPWMLLYFISFLLIVSFFVLNMFVGVVV
ENFHKCRRSQEAEEAKRREEKRLKRMEKKRRSKEKEMAGR
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcacgccagattttgatgactttatctttgcgttctttgcggtggagatggtc
atcaagatggtggcgctgggcatcttcggcaagaagtgttatctaggagacacctggaac
agactcgacttcttcatcgtgctggccgggatgctggagtattctctgaacctgcagaat
gtcagtttctcggcagtgagaacagttcgagttctgagacccctccgagccatcaacaga
gtgcctagtatgcgtatcctggtgaccctgctcttggacaccctgcccatgctggggaac
gtcctgctgctctgtttcttcgtcttcttcatcttcggcatcgtgggtgttcagctgtgg
gcggggctactgaggaaccgctgcttcctgcccgagaacttctcacttcctctgtccatt
gaactagagacctactaccacacagagaacgatgatgagagtcccttcatctgctccatg
cccagggagaacggaatgcgcctgtgttcctctgtgcccaccctgtatgagtagggaggt
ctccagtgtcagatggacatgaagtcctacaacagcacagacaacaccacctgtatcaac
tggaaccagtactacagtaactgctcggcgggacacgtcaaccccttcaaaggagccatc
aactttgataacatctgctacgcctggatcgccatctttcagattggatctttcttcatg
atcaacctgtgtctggtcgtcatcgccacccagttcagtgagaccaagcagagggagagc
cagctgatgagggaacagcgcatccgtttcctgtccaatgctagtaccctggcctccttc
tctgagccgggttcctgctacgacgagctgctcaaactcctggtccacgtcatccacaag
gggttcaggcaggtggcccatgtctgccgggccatgatgcgccgtgctgggatgaacatc
gcagcctctcctcctgccctggagagagagagggaacgggggagccagagaaagaggagg
aagacttcgagacagggttctgtggtcgccacaaaaggggctatgtccgttcattacttg
gttcaccaacatcaccatcatcactatcactatcacttagtgaacggtagtgtgagagga
agactaggggggagaggggtggcgggggtcgggggaggagggggggaagtggagatgggt
tcccatagcaacagcgtgggcactggacgtctcatgctgggtcctcttccgttgccgacc
tctgacctgaacttggcaaacctggtgtcttcggccaatcccgctctgggaaccggcagt
ggcaactcgtcatcagtgcggagtacgttacacacagactgccacctggagcccagcacc
cccacacttctcgcccccacccccttctccctggcccctacgcccatgtccaggcctatg
aagaggaactcggtgccgttcgctggacccagacctaaaaactaccccaccctacagccc
agcacgctaatggagtttagaagtggcagtgttacaactaataccattagtaatataaac
ctcaatataccctctctacccctggagagaggaccaccaagtgtgttagacacacacaca
cccacagcccagctctcaccacatgacctgagtgccatcggaaccctggacccctcgttc
acctttgaccctgagtcgtgcccctactgtgtcaaggctctgtccggggagtcagaaggc
acagacggaaacgagacccccggggaatcagacagcgagggcgtctacgagttcaccctg
gacctccaccgcagggaccgcagggaccgtcgggacagctgtcagcccaggaagaagcag
cgaaagctgggtaccacggtggggagagtggtccgggcctggaggctggtgtgtgataca
tttaggaagatagtggacagcaagtattttggaagaggaatcatgatcgccattctgatt
aatacactgagtatggggattgagtatcacgaacagcctgatgagctgaccaatgctttg
gagatcagtaacatagtgttcaccagtctatttgccttggagatgttactcaaggtgctg
gtgtatggcccgtttggttacatcaaaaacccttacaacatcttcgacggagtcatagtg
gtcatcagtgtatgggagatcgtgggccagcagggcggtggtctgtctgtgttgcgtacc
ttcagactgatgcgcgtgttgaagctggtgcgcttcatgcctgctctgcagaggcagctg
gtggtgctgatgaagaccatggacaacgtggccaccttctgtatgctactcatgctcttc
atcttcatcttcagtatattgggcatgcatctgtttggctgtaagtttggatcagagaga
gatggagacactctaccagataggaagaactttgacactctgctctgggccatcgtcacc
gtgtttcagatcctaactcaggaggactggaacaaggttctctataatggtatggcctcc
accactcctgtggccgctctctacttcatcgccctcatgacctttggaaactacgtcctc
ttcaaccttctggtggccattttggttgagggcttccagactgaggctccccctgtctct
ctaccctccacatccccgctgcacgatgccacggctgttgagactaaccagggagaagac
tccaagtcagtatcagaggctgatttatcatcgaggagtatggaggacatgaacggcagt
ggaaaggatgcgtctggctccccggtagtccctataaacggtcatgttgacctgaagacc
agtctgacccctcctctgatcacccacactgctgccacccccatgcccgttcccaagctg
ccctccgtggttgaccctgctccgggctatgagtcccgacacggcagcaacgtctccatg
gacctagcctgctacgacaagtctccgaccagtgctcgtagcacctccccttacgcccca
tggagctccgcctctggctggaccagccgtagatcaagctggaacagcgtaggccgtgct
ccttcgctcaaacgaacaaagcgtcagtctggcgaacggcggtcgctcctctccggagag
ggtgggtccagttcggaggatgatgaggggggaggaggggggacatcggagggagatgat
gtgtccctgtgtcgtaccgactccattgtccaggtgcccttcctgtatcgctcagccagt
atacacagctccagacccccctcgctaggaggcctgagagccccagaacgcagtgactgt
aacgggaaaggcactccggcccctgggggggccctggcccagacacagctctccctcgag
gacaacacagaggacgaagcggcagaggaggaggttgtgggtcgtgtcgccaggctgtca
cgctggctggagaggaaacagccagagtggtgtcgaaagagagatacctggtccctgtac
atattgcccccggactccaggttccgaatggcgtgcaacaagataatatcccacaagatg
tttgaccacgtcgttctggtcatcatcttcctcaactgcatcaccatcgccatggagagg
cctagaatagaggcatatagcgtggagcgcatcttcctcacgttatccaactacatattc
acagcgatctttgtggcagagatgacagtaaaggtggctgcgctgggctggttgtttggt
gataaggcctacctgaggagtagctggaaccttctagacgggttgctggtgatgatctca
gccatagacatccttgtctcattggtgtccaacagcagccccaagatactgggtatgctc
cgggtgctgcgcctgctacggacactcaggccactacgtgtgatcagcagggccccaggt
ctgaagctggtagtggagactctgatgtcatctctaaaacccatagggaacattgtggtc
atctgctgtgccttcttcatcatctttggtatccttggagtacagctcttcaaggggaag
ttctttgcgtgtcagggagaggacgtgagaaacgtcactaacaagtcagactgtatgatg
gccaactacaagtgggtcagacagcagtacaactttgacaacctggcacaggctctgatg
tctctgttcgtgctggcctctaaggatggttgggttgatatcatgtatgatggattagat
gcagtgggagtcaaccaacagccgcagctgaaccacaacccctggatgctcctgtacttc
atctccttcctgctcatcgtcagcttcttcgtgctcaacatgttcgtgggcgtagtggtg
gagaacttccacaagtgtcgtcgcagccaggaggccgaggaggccaagcgcagggaggag
aagagactgaaacggatggagaaaaagagacggagtaaggagaaggagatggctggtcgg
tag
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