Oncorhynchus nerka (sockeye salmon): 115107175
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Entry
115107175 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04020
Calcium signaling pathway
one04080
Neuroactive ligand-receptor interaction
one04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
115107175
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
115107175
04082 Neuroactive ligand signaling
115107175
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115107175
Ion channels [BR:
one04040
]
Ligand-gated channels
Glutamate (ionotropic)
115107175
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
NMDAR2_C
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
115107175
NCBI-ProteinID:
XP_029486466
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All DBs
Position
LG23:complement(3845624..3877479)
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AA seq
1291 aa
AA seq
DB search
MSTREVKEKDSVRLSLCLRCAWAEGSTFLQMGASLEQQIVCMFKLMEEYDWGDFVVITSM
LPGYETFVDYVRSYTDTSYFLWRLQDVLSLEMSIGTSDVRAKRMLQQIDSQVLVAYCSHE
EAQYLFQVAGEVGLLGPGYIWILPSLALGNTESPSPSSFPIGVIGVITDQWRKSLRQRVR
EGVAIVAKGAESFKRHQGFVPEGHSDCNTPVTHINNNTLFRHMLNVTWERKDLSFNSDGY
LTNPSMVIIALNRDRQWDKVGTLERGILQVRYPVWPRYGSFLEPVSDDRHLTVATLEERP
FVIVENVDPDTGTCVRNTVPCRRQSNRTESLVGHSEPYTKLCCKGFCIDILKKLSRTIKF
SYDLYLVTNGKHGKMISGIWNGMIGEVFYRKADMAIGSLTINEERSEIIDFSVPFVETGI
SVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSAKA
AGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM
IQEQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHAHMVKYNQKGV
EDALNSLKTAKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKR
PIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLL
VFSWEHLLYWKLHKELDKSPRMDFLLAISRGIYSCFNGVEEPDLPNLANPDLTANYAQAN
ILKMLRTAKDLVNSAQVETSLDHASKTIEHWGRHGGSLPVHIPQQGTTETVPGGFAYVTE
NTHLPPERPLSPQYCTLGSGTSVNQQRGLARPTPLRYTLPARTSSLYNRPLPVSSLICPH
LDLAGGDRLSSYPHPSTGRLYVDPQHLSHPRSPFIPYSELQLPDIYLSSHPPSAVSHPPH
TEPSKRKRRSKSLLSGETGRGGGQRRRRREEKTVCLAELRANHIQENHVSPHMPDSLYPG
AVLCPGEERCGDSWPLPLEELVLAGRRRRHRRPSFLRATWGSEQIRQPDDTPPTSLDSQS
HSALPDLFPRVTVDQETPTKLYNPTPFRNNLCYPAASPRQHAYLHIRQDQRKGNSRKKLR
HSHSTHLPTYREAVLGGQGGGGGVGLGVVRRTTSLLSRQYNDNLTSYPGLSLSHSPLNFQ
THSPASSNHPSPGTYRIPSPVCQLLACGGGCRSQRGLLYQDSLYGAYGAYGGAQDPDIEP
QRGEGLVGLRSEDRPCVTRPWGKVSSLESEV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccagagaggtcaaggagaaggacagtgtgcgtctgagcttgtgcctcaggtgt
gcttgggctgagggttccacgttcctccagatgggtgcatcactggaacagcagattgtc
tgcatgttcaagttgatggaggagtatgactggggagactttgtagtcatcacaagtatg
ttgccgggatacgagacgtttgtggactacgtccgctcctacacggacacttcctacttc
ctgtggaggctgcaggatgtcctgtctctggagatgtctatcgggaccagcgacgtccgc
gccaaacgcatgttacagcagattgattcccaggtactcgtagcctactgctcccatgaa
gaggcccagtacctgttccaggtagcaggggaggtgggtctattggggcctggctacatc
tggatcctcccctccctcgcgttgggcaacacagagagcccttcacctagcagcttcccc
ataggagtgattggcgtcatcaccgaccagtggaggaagagccttaggcaacgggtcaga
gagggagtggccatagtggccaaaggggcggagagtttcaagaggcatcaggggttcgtt
cccgagggacacagcgactgcaacacaccagttacacacattaacaacaacacactgttc
agacacatgctgaacgtgacatgggagcgtaaggacctgtcgtttaatagtgatggttac
ctgacaaacccttccatggtcatcatcgctttgaacagagacagacagtgggacaaggtg
gggacattagagcggggtatcctccaggtgcgttatccggtgtggcctcgatatggtagt
ttcctcgagccggtatcagatgatcgccacctgacggtagccactctggaggagaggccc
ttcgtcatcgtagagaacgtggaccccgacacgggaacctgtgtacgcaacaccgtgccc
tgccgacgccagtccaaccgcaccgagagtcttgtgggtcactcggagccctacaccaag
ctgtgctgtaaggggttctgcatcgacattctgaagaagctgtctcgcaccatcaagttc
tcctacgacctctacctggtcactaacgggaaacatggaaagatgatcagcggcatctgg
aacggcatgatcggagaggtgttctacaggaaagcagacatggccataggttctctcacc
ataaatgaggagcgttctgagatcatcgacttctccgtgccattcgtcgagaccggcatc
agcgtcatggttgcccgtagcaatgggactgtctccccctccgccttcctcgagccctat
agcccagcggtgtgggtgatgatgtttgtaatgtgcctgaccgtggtagctgtgaccgta
ttcgtgttcgagtacttcagtcctgtcggctacaaccgcagcttggtcagcgctaaagcg
gcaggaggtcctaccttcaccatagggaagtcagtgtggttgctttggggcatcgtgttc
aataactcagtccccatcgagaaccctaaaggaaccaccagtaagatcatggtgctggtg
tgggccttcttcgcagtcatcttcctggcctcctacaccgccaacctggctgccttcatg
atccaggagcagtacatagacactgtgtctggactgtctgacaagaagttccagaagcct
caggaacactaccctccattccggtttgggacagtccctaacggcagcacagaaaggaac
atcaggagtaactaccccgacatgcacgcacacatggtcaaatacaaccagaaaggagta
gaggatgccctcaacagccttaagacagcgaagctggatgcttttatctatgatgctgcg
gtgttgaactacatggcagggaaggacgagggctgtaagcttgtgactattggctctggg
aaggtgtttgctacaacgggctacggtatcgccctgcagaaagactctcgatggaaacga
ccaattgacctggccttattgcagttcctgggagatggtgacacccagcgcttggagacg
gtctggctgtcaggcatctgtcagaatgagaagaacgaggtgatgagcagtaagctggac
atagacaacatggccggggtcttctacatgctgctggtggccatggggctcagtctgctg
gtgttctcctgggaacatctactctactggaaacttcacaaggaactagacaaatctccc
aggatggacttcctgctcgccatcagcaggggtatctacagttgcttcaacggggtggag
gaaccagacctccctaacctggccaacccagacctgacagctaactatgcccaggctaac
atcctcaagatgctacgcactgctaaggacctggttaactccgcccaagtcgagacctca
ctggaccacgcctccaagaccatagaacactggggacgccatggcggcagcctgccagtc
cacattccgcagcaaggcaccacggaaacagtcccgggagggttcgcttatgtcacagag
aatacacacctgccacccgagcgccccctcagcccacaatactgcacgctgggttcaggg
acatctgtgaaccagcagagggggctggcgagacccacaccgctacgatacacgctcccg
gctcgtacttcctctctctacaacagaccacttcctgtttctagtctcatttgccctcac
cttgacctggctgggggggatcgcctctcatcttatcctcacccctccacaggtaggctc
tatgtggacccccaacacctttcccacccccgctctcccttcatcccctatagtgagctc
cagctcccagacatctacctctcctctcacccaccctctgctgtctcccatcccccccac
acagagccctccaagaggaagaggaggagcaagagcctcctctcaggggagacaggaaga
ggaggaggacagaggaggcggcgcagggaggagaagacggtgtgcctggctgaactccgg
gccaaccacatccaggaaaaccacgtctcgccccacatgcctgactccctgtacccagga
gcggtgctctgtcctggggaagagagatgcggtgactcctggcctcttcctctggaggag
ctcgtcctagcaggcagacggcggcgccaccgacggccatctttccttcgagccacctgg
ggcagcgagcagattcgccagccggacgatactccgcctacatccctcgatagccaatca
cattctgctttaccagacttatttccccgcgtcacggtcgaccaagaaactcccactaaa
ctctacaaccccaccccgttccggaacaacctatgctatcctgccgcctcaccccgccaa
catgcctatcttcatataaggcaggaccagaggaaaggaaactcgcgtaagaagctgcgg
cactcacactccacccatctgcccacctacagggaggccgtgctggggggccagggaggg
ggaggtggggtaggcctgggggtggtccggagaaccaccagcctgctcagcagacagtac
aacgacaatctaacctcctaccctgggctgtctctatcccacagccccctcaacttccag
acccattccccggcatccagcaaccaccccagccccggtacctaccgtatccccagccct
gtatgccagctcctggcctgtggaggtggctgtcgaagtcagagggggttgttgtaccag
gacagtttgtatggagcctatggagcctatggaggggcccaggatccggacatagagccc
cagagaggagagggcttggtagggttgaggtctgaggacagaccctgtgtgactcggccc
tggggaaaagtctctagtctggagtcagaggtctga
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