Oncorhynchus nerka (sockeye salmon): 115107315
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Entry
115107315 CDS
T07952
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115107315
Domain-containing proteins not elsewhere classified [BR:
one04990
]
Other domain-containing proteins
Patched domain-containing proteins
115107315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
115107315
NCBI-ProteinID:
XP_029486573
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All DBs
Position
LG24:14532768..14567476
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AA seq
920 aa
AA seq
DB search
MCFIGRSWASASWIWRRMLRQMIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTV
LSRFKPETDIEILVAPTHSFAKVERSLANSLFPIDQSKNKLYSDLHTPGRYGRLILLAKS
GGNILELADQVLQVHKQVLDLRVNYKGFNYTFAHLCVLSHQDKRCLLDDIITIFEDIRLA
ILSNHTFSKVPVTYPNTTLKDGRVSFIGHQLGGVAFSPNSRDQQVKFARAIQITYYLRNH
GPVVQDVIAEKWENAFCTLITRLSTLSEDLHIQSLTSFSLWRDFHQTGVLAKGEVLVSLV
LLLLAATISSSMRDCLRGKPFLGLLGVLTIAIANVTSAGIFFISDGKFNSTLLGIPFFSM
GHGTKGVFELLAGWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGMGASPFTNIE
SVKIFCQSMCVAVLVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDRQPTWF
KTMMSDGHDHVTHHEVVPYHNHFIQHFLREHYTEWITNTYVKPFVVILYLIYASFSFMGC
LQISDGSNIVNLLASNTPSVSYATTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEHLTTLS
HGFNKISWMDNYFQYLKVVNVSASTKSDFITILQGSFLRSPEYQHFMEDIILSKTDGDEM
EIIASRMYLVARTTEKTREEVVELLERLRPLSLINNIKFIVFNPTFVYMDRYSSSVVSPI
LTSAFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVHMDSISILCLIYT
LNFAMDHCAPHLYTFVLATEHTRTQCIKISLEEHGAAILQNACCFVIGMLPLVFVPSNLT
YTLFKCSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKEREREREMLERERVR
EREEIECIEVRENPDHVTNV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcataggaagaagctgggcatctgcaagctggatctggaggaggatgctgcgg
caaatgatacacagagggctcaaagcttctttctactggctgggcttatttgttagtagg
catccggtttttttcctcaccgttcccgcagtcttaaccatcattttcggatctaccgtc
ctgagcagattcaagcccgaaacggacatcgagatactggttgccccgacacacagcttt
gctaaagtagagcggagtcttgcgaacagccttttccccatcgaccagtcaaaaaacaag
ctgtattccgacctgcacacccccggcagatatggcagactgattctgctggccaagtct
gggggaaatatactggagctagccgaccaggtcctgcaggttcacaagcaggtgctggat
ttgcgggttaattacaagggattcaattacactttcgctcatctctgtgtcctgagccat
caggataagcgatgcctcttggatgatataattacgatattcgaagatatccgcttagcc
attctatcgaatcacactttttcaaaggtgcccgtgacctatccaaataccacattaaag
gatggtcgtgtgtccttcatcggccaccagctgggtggagtggccttctcgcccaacagc
cgagaccagcaggtgaagtttgcccgggccatccagatcacctactaccttcgcaaccat
ggccccgtggtgcaggacgtcattgcagagaagtgggagaatgccttctgcaccctcatc
acacgcctgtccacgctcagcgaggacctgcacatccagtctctcacctccttcagcctg
tggagggacttccaccagacgggagtgctggccaaaggggaggtgctggtcagcctagtg
ctccttctgctggcggccaccatctccagctcaatgagggactgcctgaggggaaagccc
ttcctgggtctgctgggtgtgctcacaatagccatcgccaacgtgacctccgctggcatc
ttcttcatctccgacgggaagtttaactccacgctgctggggatcccattcttctccatg
ggtcatggaaccaaaggagtgtttgagctcctggcgggctggcgaagaactcgagaaagc
cttcccttcaaggaacgcgtggcagacgccttcgccgacgtgatggtgtgctataccatg
accagttccctctatatcatcaccttcggcatgggtgccagccccttcaccaacattgag
tcggtgaagatcttctgccagagcatgtgcgtggccgtcctggtcaactacttctacgtg
ttctccttctacggttcctgcttggtgttcgctggtcagctggagcagaaccgctaccac
agtgtgttctgctgtaagatcccctcagtggagtacctggaccgtcagcccacctggttc
aagaccatgatgagcgacggccatgaccatgtcacgcaccacgaggtcgtgccctaccac
aaccacttcatccagcacttcctgagggagcactacacggagtggatcaccaacacctat
gtcaagccctttgtggtcatcctctacctgatctacgcctccttctccttcatgggatgt
ttacaaatcagtgatggatccaacatcgtcaacctcctagccagcaacacgcccagtgtg
tcctatgccacgacccagcagaagtacttcagtaactacagccccgtgatcggcttctac
atctatgagcccattgagtactggaactccacggtgcaggagcacctcacaacgctgagc
cacggcttcaacaagatctcctggatggataactactttcagtatctgaaggtggtgaat
gtgagcgcctcgaccaaaagtgatttcatcaccatcctgcagggctccttcctgcgcagc
ccggagtatcagcacttcatggaggacatcattctgtccaagacagatggggatgaaatg
gagatcatcgcgtccaggatgtacctggtggcgcggaccacagagaagacacgggaggag
gtggtagaactgctggagaggctccgccccctttcgctcatcaacaacatcaagttcatc
gtcttcaaccccaccttcgtctacatggaccgctacagctcctctgtggtctcacccatc
ctcacatcggccttcagcgtgctcaccatcctcatcctcacctttttcctggtcatcaac
cctctggggaacttctggttgatcctgaccgtcacctccgtagagctgggggtcctgggc
ctcatgaccctctggaatgtacacatggacagcatctctatcctgtgccttatttatact
ctcaactttgccatggatcactgtgcaccccacctgtacaccttcgtactggccacggag
cacaccaggacccagtgcattaagatctcgttagaggagcacggggcggccattttgcaa
aacgcctgctgtttcgttatcgggatgttgcccttggtgtttgtgccttccaatctgacc
tacacgctgttcaagtgctccctcctcaccgcaggctgcacagtgctgcactgtttcgtc
atcctgcctgtgtttctaacgttttttcccccatcaaaaaaaaggcacaagaagaaaaaa
cgggcaaaacggaaagagcgggagagggagcgggagatgctggagagggagagagtgagg
gagagggaggagatagagtgcattgaagtcagggagaaccctgatcatgtgactaacgtc
tga
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