Oncorhynchus nerka (sockeye salmon): 115107509
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Entry
115107509 CDS
T07952
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115107509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115107509
Spliceosome [BR:
one03041
]
Complex C
Other components
Step II factors
115107509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
WD_LRWD1
PQQ_2
Motif
Other DBs
NCBI-GeneID:
115107509
NCBI-ProteinID:
XP_029486747
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Position
LG24:complement(29189553..29214105)
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AA seq
578 aa
AA seq
DB search
MAATLGSYLSDSDNETKSHVNPEKVDPDALAHLQPLKSGKTMSLSVLNSAHEVAVKEAVE
TGVHLDPSLKEVTYNPTYETMFAPEFGPVNPYQSKQMAAPRNMLSGYAEPAHVNNFMFGQ
QRRTFSTFGYAVDTSQNSSSSYIGAVDEAEKENKMTVSLVSPLVGLTVFEVGPKKTDKRK
KVQGGEANDIDNYLGPWAKCVDEKDGAKPSEEEQKELDEITAKRQKKGRNEEEAPAAKTI
LHVKDAYDYQGRSYLHVPQDVGINLRTADIPDKCYLPKKQIHVWSGHTKGVSAIRLFPVS
GHLLLSCSMDSKVKLWEVYNERRCIRTFIGHSKAVRDICFNNTGSQYMSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDVRTGEVVQEYDRHLGA
VNTITFVDENRRFVSTSDDKSLRVWECESVVFKYIAEPSMHSMPAVTLSPDGKWLSCQSM
DNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTK
LYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccctcggttcgtacttgagcgattcagataatgagaccaaatctcatgtt
aatcccgaaaaggttgaccccgatgctctggcacatcttcaaccgttgaaatctggcaaa
acaatgtcactgtctgtcctcaattcagctcatgaggtcgccgtaaaggaggctgtggag
actggtgtacatctggacccctctctcaaagaggtcacctacaaccccacatatgaaacc
atgtttgcgccagagtttggtccggtcaacccatatcaaagtaaacagatggctgcaccc
aggaatatgctgtctggctatgcagagcctgctcacgtcaataactttatgtttggacag
cagaggaggaccttctccacctttggctatgctgtggatacaagccaaaactcctccagt
agctacatcggtgcagtggacgaggcagagaaagagaataaaatgacagtttctcttgtt
tctcctctcgtaggattgactgtgtttgaggttggcccaaagaagactgacaagaggaaa
aaggtgcaaggaggtgaagcgaatgacattgacaattacctcgggccctgggcgaaatgc
gtggatgaaaaggacggtgccaaaccatcagaggaggaacagaaggagctggacgagatc
acagccaagaggcagaagaagggaaggaacgaggaagaggctccggcggcgaagaccatt
ctccatgtcaaagatgcgtacgactaccaggggaggtcatacctccacgtaccccaagac
gtgggcatcaacctgcgtactgcagacatcccagacaagtgttacctgcccaagaaacag
atccacgtctggtctggacacaccaagggggtcagtgctatccgtctgtttcctgtgtca
ggtcacctgctgctctcctgctctatggacagtaaggtcaagttgtgggaggtgtataac
gagaggaggtgcatacggacatttatcggccacagtaaagcagtgcgggatatctgcttt
aacaacactgggtctcagtacatgagtgcagcctacgaccgctacctcaaactctgggac
accgagacaggccagtgtatctcccgcttcaccaacagaaaggtgccatactgcgtcaag
ttcaacccagacgaagacaagcagaatctgtttgtggctggcatgtctgataagaagatt
gttcagtgggacgtgaggacaggagaggttgttcaggagtatgaccgtcacctgggagcg
gtcaacaccatcacatttgtggatgagaaccgccgtttcgtcagcacatctgacgacaag
tccctccgcgtgtgggagtgtgaaagcgtggtctttaagtacatcgcagaacccagtatg
cactcaatgcctgctgtaacactctcacccgatggtaagtggctgtcctgccagtccatg
gacaaccaaatcctgatctttggagcccagaaccgtttccgtctgaacaagaagaagatc
ttcaagggccacatggtggctggctatgcctgccaggtggacttctccccagacatgagc
tatgtggtgtctggcgatgcggatgggaagctgaatatctgggactggaagaccaccaag
ctctatcaccggatcaaggcccacgacaaggtgtgcatcagcgccctgtggcatccgcat
gagacctccaaggtcatcacctgtggctgggacggacagatcaaactctgggactag
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