Oncorhynchus nerka (sockeye salmon): 115107515
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Entry
115107515 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A-like
KO
K14328
regulator of nonsense transcripts 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115107515
03015 mRNA surveillance pathway
115107515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115107515
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115107515
mRNA cycle factors
P-body specific factors
115107515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
RRM_1
Motif
Other DBs
NCBI-GeneID:
115107515
NCBI-ProteinID:
XP_029486754
LinkDB
All DBs
Position
LG3:26188328..26214899
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AA seq
481 aa
AA seq
DB search
MRSEKDQMPGGREKSVVEIQFRDIPREQDAVFVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEEKRKRREEER
RKRKEADKLKKLSEKEIKIKLLKKCDRDDDMDSDRLKDKGDSGDTERAKWDKPSGQMRFK
EAKDKGQMESDKGEHGRRQRDKDHRGRDEERKRQRHHYEFDKFIRRKEETKWGKGYCQDR
AKKDGHHHGSYSYCPSTGDKVGKEDREGIGASRKDRTRNKSVLAHQDRGTSQSEGPHQIG
GALPNKDRPAMQLYQPGTRKCMGSASKGYELPIGQSPEHVAVDHCYEAIAMGTGSEKSSE
D
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgcccggaggcagggagaaaagtgtcgtcgagatacaa
tttagagacattccgagggaacaggacgccgtctttgtcaactcaaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctttgactactttgagttcttccctgca
gatcaaagcctctacccacacttgttctccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcaccctttcagaaagtatccaagaagaaactcaaa
aagaaagatgccaaagccggaagcattgaagaagacccagagtactgtcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaagggaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcagaggataagggaggaaaagagagaggagcgtcgacgcagg
gagatggagaagaaacgccagagggaggaggagaaaaggaagcggagggaggaggagaga
cgcaaacgcaaggaggcggataaactgaagaagctgtcggagaaggagatcaagataaag
ctcctaaagaagtgtgaccgggacgatgacatggactctgacaggctcaaggacaaaggg
gacagtggggatacggaaagggccaagtgggacaaacccagtggacaaatgaggttcaag
gaagccaaggacaagggtcagatggagagtgataagggagaacacggccgcaggcagaga
gacaaagaccacagaggaagagatgaggagaggaaacgacagcgccaccactatgagttt
gacaagttcatacggcgcaaggaggagaccaagtggggcaaaggctactgccaggaccgg
gccaagaaagatggccaccaccacggctcctactcctactgccccagtacgggtgacaag
gtgggtaaggaggacagggaaggcattggcgctagcaggaaggaccgcacccggaacaag
tctgtgttagcccatcaggacagagggacgtcccagtcagaggggccacaccagatagga
ggggctctgccaaacaaggacagaccggccatgcagctctaccagcctggcactcgcaaa
tgcatgggctcagcgagcaaaggttacgagctccccatcggccagtcgccagaacacgtt
gcggtagatcactgctatgaggccattgccatgggaacaggctcggaaaagagtagtgaa
gattag
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