Oncorhynchus nerka (sockeye salmon): 115107560
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Entry
115107560 CDS
T07952
Name
(RefSeq) syndecan-1-like
KO
K06257
syndecan 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04512
ECM-receptor interaction
one04514
Cell adhesion molecule (CAM) interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115107560
04514 Cell adhesion molecule (CAM) interaction
115107560
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115107560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115107560
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
one04090
]
115107560
00535 Proteoglycans [BR:
one00535
]
115107560
Membrane trafficking [BR:
one04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
115107560
CD molecules [BR:
one04090
]
Proteins
115107560
Proteoglycans [BR:
one00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
115107560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
I-set
Motif
Other DBs
NCBI-GeneID:
115107560
NCBI-ProteinID:
XP_029486830
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All DBs
Position
LG24:2456353..2460257
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AA seq
191 aa
AA seq
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MRTLVISTLLFAMGTCLPAITTSYSIPPEDLDGSGHDLESSGSGSGERAEVSKGSVRFTT
ISTFTMTMSEDDLMFNAIDEEDKTIPIIMTDNTRNKISEDSDLTFDKRPKLDDNNGSAIG
NVAKSGGLLANKEALAAIIAGGVVGLALAASLLTLMVYNMKKKDEGGYTVNQKNTSNGGY
QKPKTKEEFIA
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgaggactttagtgatttccactttactgtttgctatgggcacatgtttacctgcaata
accacatcgtattctattcctccagaagacctggatggatcgggacatgatctggaaagt
tctggctcaggttcaggggaacgggcagaagtgtccaaaggctcagtgaggtttaccact
atctcaacatttacaatgacaatgagtgaagatgacttaatgttcaatgccattgatgaa
gaggataaaaccatcccaattataatgacagacaacaccagaaataaaatatcagaggac
tcagacttgacctttgacaaaaggcctaagctagatgacaacaacggatcagccattggc
aatgtggcaaagagcgggggtcttctagcaaacaaagaagctcttgcagctattattgca
ggaggagtggtgggactggccttggctgcctccctgttaacactcatggtctataacatg
aagaagaaagatgaaggaggctacactgtcaaccagaaaaacacatctaacggaggatat
cagaaaccgaagaccaaggaggagtttattgcctaa
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