Oncorhynchus nerka (sockeye salmon): 115107617
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Entry
115107617 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115107617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115107617
03021 Transcription machinery [BR:
one03021
]
115107617
03036 Chromosome and associated proteins [BR:
one03036
]
115107617
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
ARID
115107617
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115107617
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115107617
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
115107617
NCBI-ProteinID:
XP_029486927
LinkDB
All DBs
Position
LG24:complement(4497070..4598627)
Genome browser
AA seq
2246 aa
AA seq
DB search
MAAQVATAPTSTGKKRSSLTSSVSQDFKSAVVGGAVLGVGNGTIVHAINVERNHHELNPN
RARVFHVNNNSSQREKESGDSRSESFSTSNCSMSSGSMETGTLVSHKVKNVGVGDPPPSH
HHTPPQQQPFNQFIQHQQRQIHNSQQSIHGESGNRQHGGKENVVLGNQVELHQQQQMLNK
SEEEDQPGKTEDRINSRYDHASLGTTNNINPSQSGNSSVLEINNSYYGKGRGGPCFDQHG
GQQSPGSGIIHSVQQNNMDQLQQNSHEGYQNNPYNHYPNYRPGYGNSGYGMMSPSRHGNN
MMGPVSNTAAANHSRAAMAAASSSGSANIGGFHRFPGQSHQHPSGATPTLNQLLTSPSPM
MRGYGSGYQDYTNPSAEQQQSSMGLTKDLSSQYGSTTHSWVGQERNHPATSPGNNGQGSG
RSQVPPIDAMVMKRSQLYGMGNNPYSQQQQGGGGSYPGQPYGSPSHHYPMGMPGRGQMGM
SGMQYPQQQQQMAAQYRQQQGGMSGYCQPQGQPPYSSPPQQQPAAPTQPPYMQARPLPQQ
EVSQEGYVNRAQSAMTPGKPNHEEMGLSQQDRPSSLPDLSGSIDDLPTGTEVAISSAVSA
SGSTSSQGEQSNPAQSPFSPHMSPRLRSGPSPSPVGSPVGSSQSRSGPISPASVPGTQMA
PQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTTVPQQSGQGPAMSPHSSPGGSMHPQ
SSYHQQQLQGGPCPSYGPQTSQYGPQGNYPRPPNYGGTPSANYSGPGPGMSNSLGMNANS
PMHGQGPGQPCGSMPAGRGLGPGASGRPHLGANTNTMAPTSPSMPQPAGQGQGMRPPLPS
VNQEAGLGPGTNAMQGPNAGPNPSAQGRPPYARSPAYPGLSCPGTCPRLSPHHSPSPHPH
HSNSPRPPHHTQVSSAQSHPMMQQADQYGQGMTPMPHHPGMSPRGMASSPAGPYSQQPGA
NPSGKMTPQGPQPPYNAPSGPMLMGGEGMVCPTDPKPRPPEQYRESNIPGPAAEPPPKPK
KTSPATMTNEKIRILYEMGVEPERQVWVDRYLAFMEERGTPVPMLPAVGRKPLDLCRLYL
CVREIGGLAMVNKSKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECRVERGEEPPLE
IPGETKKQAKIQPPSPANSGSLQGPHTPQSTGSSSMTEMSEGMKLPIPATTPHATPQPGN
RNSVGIRVQDPFSEVSDPAFHKRGPMPSGAQYQQVGGSADPSMRMQYDANKDPYEGPRKG
PGGSEPYRPGQMASGAMQDMYPRGPPSGAMPGMGMGPGPRSQYPYGPGYDRRPDHVMGSE
GGVPPPGGQNNMVPSSGDPSMYSANRYPHQRPHGHESYGQQYPHGPMPYGSHQSGMYPQQ
GYKRPVGQEGMYGPPAKRHEGEAYDMQQYGGQQPDMHRQYGGGYMGPEHRPMQGQYPYPY
SLDRMGAIQGPQQHGMMSGGPPFPSGASPEGPQANMWHPRTDMGYPGPYPGRQGQGPPYP
VMSRGPGDDPEGRALQDGQWLSGHPGQRQSPYPCPSSSSMPPMASRQPPSSYQSNPAMAN
HIARAPSPFARPMGGPGPLSPNNGGHYMASLKKAGMPGSMPGSHSGGMSGQGILPLHRDI
SFPMGSVEATLPKLKVRRRLTSKETGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDT
TVSSFTLSQLPGFLELIVEYFRRSLISIFGILDEYEVGTEGQKMLLGPITDQEEGLDSQL
DEEQRDSGPEKTTANSNTEEAVPEEKEEPVEVTLKEKVEGEEKEGAATEQSQPPEPRPKQ
ASKYDKLPVKVEEDQVKEDQELSLSRGFTSGLLHWKAGGGDSTAHIQTHFEIRGEETNSK
PTERKEREDKTETTEEERKAVVEKSMTETATMDDMLSAWPGSLSERNGLPGTQTQSPIFT
LLEDEPRCWDEAPLSTAEPWQDALARRCVCISNIVRGLSFIPGNDNDMSCHPGLVLILGR
LVLLHHLHPQRRRMPPSYQREEEQGRACSKDQWWWDCLSALRENTLVTLANISGQLDLSL
YPESICLPILDGLLHWMVCPSAEAQDPFTTASCSSSLTPQRLVLECLCKLSIQDNNVDLL
LATPPFSRQEKLYATLVHHVGERKSQVCREMAVAVLSNLAQGDPTAARAIALQKGSVGIL
IGFLEDCVAMCQQGPHSLLHPAAHPQPPSVNMMCRAAKALLAMAKEHRTELVLYESRLLD
ISLSSVLSSAVAAIMCEVLFKIGRSS
NT seq
6741 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaactggtaagaaaaggtcgagtttaact
agcagcgtgagtcaagattttaaatctgcagtagttggtggagctgtacttggggtagga
aacgggactatcgttcatgctattaatgtagaacgcaatcaccatgaattgaacccaaac
agagctcgagtttttcatgtaaacaacaattcgagtcaacgtgagaaggaaagtggagat
tctagatcggagtctttttcgacttcaaattgtagcatgagttcgggaagcatggagacg
ggaacgcttgtcagtcataaagtgaaaaatgttggtgtcggagatcctcctccatcgcac
caccacacacctccacagcaacagccattcaatcaattcattcagcaccaacaacgccaa
attcacaacagccagcagtcgatacatggagaaagtggaaaccgccaacatggaggaaaa
gagaacgttgttttagggaatcaagtggagcttcatcagcagcaacaaatgctaaataaa
agtgaggaggaggaccaaccgggcaaaacggaggaccggattaacagcaggtacgaccat
gccagtttgggaacaactaataacatcaacccgtcccaaagtgggaatagttctgttttg
gagataaataatagttattatggaaagggaagaggagggccttgctttgatcaacatggc
ggacaacaaagcccagggtctgggataatacattcggtacaacagaacaatatggatcaa
cttcaacaaaactcccacgaaggataccaaaacaacccgtacaatcactacccgaactac
cgacctggctacggtaacagtggatatgggatgatgagtccctctcggcacgggaacaac
atgatgggcccagtcagcaacactgctgctgctaatcatagcagagctgccatggctgct
gcctcttcttctggtagtgcgaatattggaggttttcacagatttccagggcaaagtcat
cagcatccgtcgggggctaccccgactctaaaccagttactgacgtccccgagccctatg
atgcggggctatggcagtggctatcaagattacactaatccttctgctgaacaacaacaa
tcaagcatggggctgactaaagacttgagctcccaatacggttcaacaactcatagttgg
gtaggacaagaaagaaatcaccctgccacgagccctggaaacaacggacaaggaagcggc
agatcacaggtgccaccaatagacgccatggtgatgaagcgctctcagctgtacggcatg
ggcaacaacccttactcccagcaacagcagggcgggggcggctcctaccctggccaacca
tacggatcaccttctcaccactacccaatgggaatgcctgggaggggtcagatgggcatg
agtggaatgcagtatcctcaacagcagcagcagatggcagctcagtataggcagcagcag
gggggcatgagtgggtactgccagccacaaggccagcccccgtactccagccctccccag
cagcagcctgcagcccccacgcagcccccctacatgcaggcacgtccactgccacagcag
gaggtgtcacaagagggctatgtcaatagggcccaatctgctatgacccctgggaagccc
aaccatgaggagatgggcctcagccagcaggacagaccctccagtctacctgacctgtct
gggtctatagatgaccttcccacgggcacagaggtggctatcagctcagcggtcagtgct
tcggggtccaccagcagccagggcgagcagagtaacccggcccagtctcccttctcaccc
cacatgtcccctcgcctgcgtagcggcccctccccctcccccgtgggatcacccgtggga
tccagccaatcgcgctccggaccgatctcccccgccagtgtcccaggcacccagatggcc
ccacagacccctgggaacatgtctgatgtgggttcccattccaccctgagccagtccccc
atgtctcaggagagagggttcccacctgccatgcagcggaacaccacagtcccccagcag
tcaggtcagggacccgccatgtcccctcactcgtcccccggtggctccatgcacccccaa
agctcctaccaccagcagcagctgcaggggggcccctgcccctcgtacggaccccagacc
agccagtacggcccccaaggtaactaccccagaccccctaactacggcgggacccccagt
gccaactacagcggccccggccctggcatgagcaacagcctgggcatgaatgccaatagc
cccatgcacggccagggccctgggcagccctgtggctccatgcccgccgggcgaggcctg
ggcccgggggccagtgggcgaccccaccttggtgccaataccaacaccatggcccccacc
tctcccagcatgccgcagcctgccggacagggccagggcatgagaccgcccctgcccagt
gttaaccaggaggcaggtctgggtccgggaaccaacgccatgcaggggcccaacgctggt
cccaacccttctgcacagggcaggcctccctacgcgcgctcccctgcctaccccggcctg
agttgtcctggaacgtgccctcgcctctctccccatcactctccctcccctcacccccat
cactctaattccccccgtcccccccaccacacccaggtcagcagtgctcagagccacccc
atgatgcagcaggctgaccagtatgggcagggaatgacccccatgcctcaccatccaggc
atgagccccagagggatggcctccagccctgctggcccctacagccagcagccaggggcc
aacccctctgggaagatgaccccacaggggccccaacctccctacaacgcaccctccggg
cccatgcttatgggaggagaggggatggtgtgtcccactgaccccaaaccgagacctcca
gagcagtacagggagagcaatattcctggtcctgccgccgagcccccacctaaacccaag
aagaccagcccggccactatgaccaatgagaagattcgcatcctgtacgagatgggcgta
gagcccgagaggcaggtgtgggtggaccgttacctggcctttatggaggagaggggcacg
cctgtacctatgctgccagccgtgggcaggaagcccctggatctatgccgcctctacctg
tgtgttcgagaaataggaggactggccatggtgaacaagagcaagaagtggagggagctg
tccacccatctcaacgtgggcacgtccagcagctctgccagctctctgaagaagcagtat
atccagtacctgtttgcctatgagtgcagggtggagcggggagaggagccgccgctggag
atcccgggggaaaccaagaaacaggctaagatccagccaccctcaccggccaactctggc
tccctgcagggtcctcacaccccccagtctacaggtagcagctccatgactgagatgtca
gagggcatgaagcttcccattcctgccaccacaccacacgcgaccccccagccaggtaac
aggaacagtgttggtatccgtgtccaggatcccttctcagaggtcagtgaccctgccttc
cacaagcgagggcccatgccctctggcgcccaataccagcaggttggcggtagtgcagac
ccctccatgaggatgcagtatgacgccaacaaagatccctatgaagggccccggaagggg
ccagggggcagtgagccctatagaccaggtcagatggccagcggggccatgcaggacatg
tacccccgtggtcctccctcaggagccatgccagggatgggtatgggccctggcccgcgg
tcacagtacccctacgggcctggctacgacaggagaccagaccatgtgatgggttcggag
gggggggtgcctccccctgggggccagaacaacatggtaccttccagcggtgacccaagc
atgtactctgccaaccgatatccccatcagcggccacatggacatgaaagttatgggcag
cagtaccctcacggccccatgccctatggctctcaccagtctgggatgtacccacaacag
ggctataagaggccagtgggacaagaggggatgtacggtccccctgctaagcgccatgag
ggtgaagcctacgacatgcagcagtacggagggcagcagccagacatgcaccgccagtat
ggagggggctacatggggccggagcacaggcccatgcagggccagtacccttacccctac
agcctagaccgcatgggagccatccaggggccccaacaacacggcatgatgagcggaggt
cctcccttcccctccggagcctctccagagggcccccaggccaacatgtggcaccccagg
acagacatgggctaccccgggccctaccctggccgacagggccaggggccaccttaccct
gttatgtcccggggtccgggggatgacccagagggaagggccctccaggacggccaatgg
ctgtccggacacccgggccaacgccagtccccatacccatgtccctcttcctcctccatg
ccccccatggcttcccgacagcccccctcctcctaccagtctaaccctgccatggccaac
cacatcgctagagcccccagccccttcgcccggcccatggggggacccggacccctttcc
cccaacaacgggggccactacatggcctctctgaagaaggcagggatgcctgggtccatg
ccaggctcacacagtggggggatgtcagggcagggcattctacctctccacagagatatc
agcttccccatggggtctgtggaggccaccctgcccaaactcaaggtccgacgcagactt
acttccaaggagaccggaaccccagaggcgtggcgtgtgatgatgtctctgaagtcaggt
ctgctggctgagagcacatgggcgctggacaccatcaacatcctgctgtatgacgacacc
actgtgtcctccttcaccctgtcacagctgcctggcttcctggagctgatagtggagtac
ttccgccggagtctgatctccatctttgggatcctggatgagtacgaggtgggcaccgag
ggccagaagatgctgctcggaccaatcacagaccaggaagaggggcttgacagccagtta
gacgaagagcagagggacagcgggccagagaagaccacagccaacagcaacacagaggag
gcggtcccagaggagaaggaagagcctgtggaggtgactttgaaagagaaggtagagggg
gaggaaaaggagggggccgccaccgagcagtcccagcccccagagcccaggcccaaacag
gccagtaagtacgacaagctgcctgtgaaggtggaggaggaccaggtgaaggaggaccag
gagctcagtctgtccagggggttcacctctggcctgctgcactggaaggctggaggaggg
gactccactgcccacatccagacacactttgagatacgtggcgaggagaccaacagtaag
cctacagagaggaaagagagggaggataagacagaaacgacagaggaggagaggaaggct
gttgtagagaagagcatgactgagacagccactatggacgatatgctgagtgcctggcca
ggctctctgtcagagaggaacggtcttcccgggacgcagacccagagccctatcttcacc
ctgctggaggacgaacctcgctgctgggacgaggcgcccctctccacggccgaaccctgg
caggacgccctggcccgccgctgcgtttgcatctccaacattgtccgcggcctctccttc
atcccggggaatgacaacgacatgtcctgccaccctggcctggtgctgatcctggggcgg
ctggtcctgctgcaccacctgcacccccagaggaggaggatgcctcccagctaccagaga
gaggaggagcagggccgggcctgcagtaaagaccagtggtggtgggactgtttgtcagcc
ctcagggagaacactctggtcaccctggctaacatctcaggtcaactagacctgtccctc
tacccagagagcatctgtctgcccatcctggacgggctcctccactggatggtgtgtccc
tctgccgaggcccaggaccccttcaccacggcgagctgctcctcctccctcaccccccag
agactggtgctggagtgcctgtgcaagctgagcatccaggacaacaacgtggacctcctg
ctggccacgccgccgttcagccgccaggagaagctctacgccaccctggtgcaccacgtg
ggtgagcggaagtcccaggtgtgccgggaaatggcagtggctgtgctctctaacctggcg
cagggggacccgaccgcggcgcgcgccatcgcactgcagaagggcagcgtggggatactc
atcggcttcctggaggactgcgtggccatgtgccagcagggaccccacagcctgttacac
ccagcagcacacccccaaccccccagcgttaacatgatgtgcagggccgccaaggctctg
ctggccatggccaaggagcaccggacagagttggttctctacgagagcaggctactggat
atctccctgtcctctgtgctgagctcagccgtggcggccatcatgtgtgaagtactgttt
aagattggacgctcctcgtga
DBGET
integrated database retrieval system
