Oncorhynchus nerka (sockeye salmon): 115107625
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Entry
115107625 CDS
T07952
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03008
Ribosome biogenesis in eukaryotes
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115107625
09123 Folding, sorting and degradation
03018 RNA degradation
115107625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115107625
03019 Messenger RNA biogenesis [BR:
one03019
]
115107625
03009 Ribosome biogenesis [BR:
one03009
]
115107625
03016 Transfer RNA biogenesis [BR:
one03016
]
115107625
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115107625
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
115107625
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Pre-60S particles
RNases
115107625
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
115107625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
115107625
NCBI-ProteinID:
XP_029486932
LinkDB
All DBs
Position
LG24:complement(4899058..4941689)
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AA seq
960 aa
AA seq
DB search
MGVPAFFRWLSRKYSTIVVHCTEERSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKSRIREEILGKGGYLPPVEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLSNDPGWRNITVILSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCAMCGQKGHEIKDCQGVAREKQGEHDEFADTMPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERTVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYITENGFVKLESVELIMQAIGVAEDNIFKKRKEDDEGFKRRNKD
KKKRMKAQQQGPAYMTAGQFAPQALGGRGRPGVVQNARHQAFDMRMQGRDQHNKDAAQSL
KAMMKNGGQAGSSDGQDGRGVKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATD
DDFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFELGTKP
FKPLEQLMGVFPAASGNFLPQTWRSLMSNPESSIIDFYPDDFAIDLNGKKYAWQGVALLP
FVDERRLRAALAEVYPNLSPEENKRNSLGSDMLFVGKSHPCCDFIQELYRGESHEGTEMP
AELCHGIQGTLNLDEDPILPDKPVQSPIPMLRDIAQNTAIGVKYKDPQYGETFVFKAVIL
PGAKMPEKVLKPGDWERGNRGRGNWRPQLGFNSNRQQVHLDQSAFRALGHSMNRQQQGGG
QYSNAPPPGNYHQGNYNRPPHSGSGGHLPAFQHSRQQGLLGTPPPYNPPQQYPRQQYGGG
GGHGWDRSTQRGGHGGGQGQGGYHQQRGQDDRRGDRGGQPGYHSGRNYHLPPPEGKYNWS
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcattttttcgttggttgagtcggaaatattctacaattgttgtccat
tgtactgaggagaggtccaaggaatgtaatggggtacgaattcctgttgataccagcaaa
ccgaatccaaatgaagtggagtttgacaatttgtacttggacatgaatgggatcattcac
ccctgtacacatcctgaagacaaggctgcacccaaaaatgaagatgaaatgatggttgcc
atctttgaatacatggatcggctcttcaatattgtgcgacccagaagggttctctacatg
gctattgatggagtggcccctcgtgccaaaatgaaccagcagcgctccaggcgattccgt
gcttctaaggaaggagtggaactggttgaggagaaatcccgcatccgagaggagatcctc
gggaaaggagggtatcttccaccggttgaaatcaaggagagatttgacagcaactgtatc
accccaggcacagagttcatggacaaccttgcaaagtgtctccgttactacgttgcagat
agactcagtaatgaccctggatggcgtaacattacagtaatcttgtctgatgccagtgtc
cctggtgagggggagcataagatcatggactatattagacggcagagagctcaaccccac
catgaccccaacacacaccactgtctttgtggagctgacgctgacctgatcatgctgggt
cttgccactcacgagcccaatttcaccatcatcagagaagagttcaagcccaaccagcct
aggccctgtgctatgtgtggacagaaaggccatgagatcaaggattgccagggagtggcc
agggagaaacagggagagcatgatgagtttgcagacactatgccggcttctgaacaggag
ttcatattcatcaggctgtgcgttttgcgcgagtacctggagcgagagctgacaatggcc
agtctgccctttccctttgactttgagaggactgtcgacgactgggtcttcatgtgcttc
tttgttggcaatgatttcctgcctcacttaccgtccttagagattagagagggtgcgata
gatcgactggtgggcatctacaaagacgtcgtgcacaagactggaggctacatcacagag
aatggttttgtcaaattggagagtgttgagttgatcatgcaggccatcggcgtggctgag
gacaacatcttcaagaagcgcaaagaggacgatgagggattcaagcgaaggaataaggac
aaaaagaagagaatgaaggctcagcagcagggcccagcctacatgaccgctggtcagttc
gccccccaggcccttggcggcagaggcagacctggggttgtccagaacgcccgacaccaa
gccttcgacatgcggatgcaaggcagggaccagcacaacaaggatgctgcgcaatcccta
aaagccatgatgaagaatggtggccaggcaggaagcagtgatgggcaggatggccggggt
gtgaagcggaaagccgaggacagtgacagcgagccagagcctgaggataacgtcaggttg
tgggaggatggctggaagcaaagatactacaaaaccaagtttgatgttgacgcgactgac
gatgacttccgcaaaaaggtggtgaagtcctacgtggagggtctctgctgggtactccga
tactactaccaggggtgcgcgtcctggaagtggtacttcccgttccactacgccccattt
gcctcggacttcaaagacatcaaaggcatgttcaccgactttgagcttgggaccaagccg
ttcaagcccctggaacagctgatgggtgtcttccctgccgccagtggaaacttcctgccc
caaacatggcggtcactcatgagcaacccagaatcctccatcattgacttctaccctgat
gactttgccattgacttgaatggaaagaaatatgcttggcagggtgttgcattgcttccc
ttcgtggatgagcgcaggctgagggcagccctggctgaagtctacccaaacctttctcca
gaggaaaacaagaggaacagccttggcagtgatatgctgtttgttgggaagtctcatcct
tgctgtgacttcatccaggaactgtaccgtggagaatctcatgagggcactgagatgcca
gcagaactatgccatggaattcaaggtacattaaatcttgacgaagaccctatcctacca
gataagccagtgcagtctcccatccccatgctgcgggacattgcacagaacactgccatt
ggagtgaaatataaggacccacagtacggagagacctttgtgttcaaggctgtcattctt
cctggagctaagatgcctgagaaggttctgaagcctggggactgggagagaggtaaccgt
ggcaggggtaactggaggccccaactgggtttcaactccaacaggcagcaggtccacctt
gaccagtcagccttcagggccctgggtcacagcatgaacagacagcagcagggaggtggg
cagtacagcaacgctccgccccctggcaactaccaccaggggaactacaacaggcccccc
cacagcggcagtggtggtcacctcccagccttccaacattctaggcagcagggtcttcta
gggacacctcccccatacaaccctccgcagcaatatccaaggcagcagtatggtggtggt
ggtgggcatggctgggaccggtcgactcagagaggaggccacggaggggggcagggccag
ggcggctaccatcagcagcgtggtcaggacgaccgcagaggagaccgtggaggacaaccg
ggataccactctggacggaattaccacttgccacccccagaaggaaaatacaattggagt
taa
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