Oncorhynchus nerka (sockeye salmon): 115107706
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Entry
115107706 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115107706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115107706
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115107706
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115107706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
PRY
zf-RING_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
115107706
NCBI-ProteinID:
XP_029487157
LinkDB
All DBs
Position
LG1:complement(17031111..17094182)
Genome browser
AA seq
691 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPNEPVQSISAFQCPTCR
YVITLSQRGLEGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAALDSTAMTSPSERVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPMPDCHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYEKLKRTPDCYLSERSEQEETDQ
VIYTQALDSNLSNLIKRNNELETLMGKLIQTCQHVECNASRQENKLLEECDLLIDIIQQR
RQMIATKIKEGKAIRLRKLAQQIASCKQIIERSSSLITQADHTLKETDHARFLQTAKSIC
ERVSMATASSQILIPEINLNDTFDTFALDFTREKKMLESLDYLTAPNPPIIRAELCTASN
DTITVHWTSDDEFCVVSYELQYAIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQCG
TKYMFIVKAINQAGSRSSEPWKLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETLSKKS
HTQDRFTSQGSYGITGNVYIDSGRHYWEALIGGSTWFAVGVAYKSAPKHEWIGKNSASWV
LSRCNNSWVVRHNSKEMPIEPSPHLRRVGVLLDYDAGSLAFYDGAGSQHLYTFDIAFAQP
VCPVFNVWNKCLTVLTGLPIPDHLEGTDCRD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgtctggagctctttgaggaccca
ctgctcttgccctgcgctcacagcctgtgtttcaactgtgcccaccgcatcctagtctcc
cactgcacccccaacgagcctgtgcagtccatcagcgccttccagtgcccaacctgtcgc
tatgtcatcaccctcagccagaggggcctagaaggactgaagcgtaacgtcactctgcag
aacatcattgaccgctttcagaaggcttccgtgagcgggcccaactcccccagtgagact
cgccgcgagcgggccgccctagacagcacggccatgacctcccccagcgagagggtgcag
tgtcagttctgtgagcaggaccctccccaagacgccgtcaagacctgtgtcacctgtgag
gtgtcctactgcgatgaatgcctgaaggccacccaccccaataagaagccattcactggc
caccgtctgatcgagcccatgccggactgccacctcaggggactcatgtgtctggagcac
gaggacgagaaggtgaacatgtactgtgtcacagatgaacagttgatctgtgccttgtgc
aaactggtcggtcggcatcgggaccaccaagtagcagcactcagcgaccgctacgagaaa
ctgaagagaactccagactgctatctcagtgagaggagcgaacaggaggaaacagaccag
gtgatatatacgcaagccttggactctaacctcagcaatctaatcaagaggaacaatgag
ttggaaactctgatgggcaagttgattcagacttgccaacatgtggagtgcaacgcatca
agacaagagaacaagctccttgaagaatgtgacctcctgatcgacatcatacagcagaga
aggcagatgatagccaccaagataaaggagggcaaggctatacggctgcgaaagctagcc
cagcagatcgccagctgcaagcagatcattgagagatcgtcatccctcatcactcaggct
gatcacaccctcaaggagacagaccatgcccgcttcctgcaaacagccaaaagcatctgt
gaaagagtgtccatggcaacagcatcctctcagatcctgataccagagatcaacctaaat
gacacctttgatacgtttgcgttggacttcacaagggaaaagaaaatgctggaaagcttg
gattacctcacagcaccaaatcccccaataatccgggcggaattgtgtacggcatcgaac
gacaccatcactgttcactggacgtctgatgacgagttctgtgtcgtctcctatgagctt
cagtatgccatcttcaccggacaagccaatgttgtcagtttgtgtaactcggctgatagc
tggatgattgtgcccaacatcaagcagaaccactacacggtgcatggactccagtgtggc
accaagtacatgttcatcgtcaaggccatcaatcaggcagggagtcgcagcagtgagcct
tggaaactcaagaccaacagtcaaccattcaagttggacccaaagtctgctcacaagaag
ctgaaggtctcccatgacaacctgacagtggaacgagatgagacgttgtccaagaagagc
cacactcaggaccgcttcaccagccagggcagctacggcatcacagggaatgtgtacatc
gacagcgggcgccactactgggaagccttgataggagggagcacatggtttgctgtgggc
gttgcttacaagtcagcaccgaaacatgagtggatcggcaagaactctgcctcgtgggta
ctgtctcgctgcaacaactcctgggtagtacgtcacaacagcaaggagatgcccatcgaa
ccgtccccccacctgcgtcgtgtgggggtgttgctggactacgatgctggctccctggcc
ttctacgacggcgccggctcacagcacctgtacacgttcgacatcgccttcgctcagcca
gtctgtcccgtgttcaacgtgtggaacaagtgtctgaccgtcctcacagggctgcccatc
ccagaccacctagagggaacagactgccgggattaa
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