Oncorhynchus nerka (sockeye salmon): 115108101
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Entry
115108101 CDS
T07952
Symbol
lmo7
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain only protein 7
KO
K06084
F-box protein 20
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
115108101 (lmo7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115108101 (lmo7)
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
115108101 (lmo7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
PDZ_6
LIM
PDZ
PDZ_2
CH
Motif
Other DBs
NCBI-GeneID:
115108101
NCBI-ProteinID:
XP_029491973
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All DBs
Position
LG1:6860956..6965670
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AA seq
1404 aa
AA seq
DB search
MACFSCSVFLQQWFEIMGKGVTNHFLGSDNFRSALENXVLLCDLINRIKPGIIKRVNRLS
TPIAGLDNVIVFLRLKEAQLFRSGDLQDTSTRVNVKQERSDKSVKSVLITIYWLGRKAQC
DPFYNGPNLRLKAFEGLLDIAALSKALEESSGQIASSSRRFREETVVSETAGIVGEGIYC
CESVSETDSVFRMAADSNKDSLHYRRSLVIEPKTTTQFNQFLPTKDKPAAYVPAPLRKKR
AERHEDSRRSWASPMYTEEDGTFTRLLQKRAVANDGSKSMTDLAVEQAALKQVCHEELQK
IREQVKENEDQWQDDLTKWKNRRKSVNSDIVKKKEEREQIEQTTESSGGGSGGSLRSIRS
SIGSRLNSLAALDQDVFEDSAPVLQIRTLPPRSYTIDYPYTPVERPSPTPPSVPHPREED
PVPTTATDRAYSPSRGDMSNSSDRPSGSGSDITNNTTTIGRTSNYNRYVPTPSERAPTPS
ERAPTPSERAPTPSERAPSPALRYTSAAKMEETSSTTTTPSILPKLPEPRRPWAGKVAEE
VTTSTGGGSLYKLQPLYNSVAMEQKPVPPSVSRVSASLPRSYMKSDSARLTSVITPRPFG
SQSTCVASLPRAYTKSVNGEMDVTQKSSAPSRYSQVMTSEDEARSHSNSANSSGGEEEEE
EEEKRERVRGVNPTLVPTLAPSPVPPQARSPFTALQPPKVASSAPVGPVPAKDTNKESYA
DMRISLNQKPNSSRDFGFQTEWDSTGAHVTSIQPGSPAELCQLQVGDEVLAVSGHRVAEM
SYGEWKSSTEQALQQGSLTMDIRRHGRNNWDRDLPSLPCKSHKTINLTSMNHHPTLIGSP
NTATVNSTTSLAFTSQGSIETTKEIAIQQIVDVASIGVNGGSRDKTVTVKNKESVEPISL
KNLKRRSEFFEQGGSDSAISDMPVPSIAPSNHWSWDLEEERRRQEKWQKEQERLLQEKYS
RDQEKLEEEWRRAQQDAVTDGGRHHQEEPSSKSISLPCPLRQPILPWEDQEEERMRRREE
EEAQRRQEEKRRMEDEQRRQRKEEELRWQRRKEEEREEERRHQKAANQQHMENARMQEQQ
QWVGDSCGYAKVQPEISMADRAKSKSTPELDDVEKPETKSWYGRSGGMAQKLLEEELRRK
ADKKAQSLQAASELELERRNILNAMRYREPERVTSSGRLDEASWRNGQQSQSQAELERQQ
ILQEMKKKTQLTTDNSWIRQGNTTSKDPTASLISRGESLDNLDTAPRSSWRSSWSTSSSG
GGNSGSGVGGRPSSATLPSSLSMSSLRGAGGSNPSSWSQCSPSPSPSPTPPSGLEIESRP
SSQQRSRSVSGKKVCTFCDTVLGKGAAMIIESLGLCYHLTCFKCIDCKSDLGGSEAGAEV
RIRSRQLYCNTCYTRFKTGQPTSM
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcctgtttctcctgctctgtgttcctgcagcagtggtttgagatcatgggaaaggga
gtaaccaatcattttttggggagcgacaacttccgatctgcactggagaactgagttttg
ttgtgtgatctgatcaacaggatcaaaccaggcatcatcaagagggtgaacagactctcc
acaccgattgctggactggacaatgttatagtcttcctcagactaaaagaggcacagctc
tttcgctcaggagacctccaagacacatccactagagtcaatgtcaagcaggagaggtct
gataagtctgtcaaaagtgtgctgatcaccatatactggctaggtaggaaggcacaatgc
gatcccttctataatggacctaacttaagactcaaggccttcgaaggactactggacata
gcagcgctatccaaggcacttgaggaatcatccggccagatagccagcagcagcagaaga
tttagagaagagacagtggtttcagagacagctggtatagtgggagaggggatatattgt
tgtgagagtgtctcggagacggactcagtcttcaggatggcggcagacagtaacaaggat
tcactgcactaccgccgctcgctggtcatcgagcctaaaacgaccacgcagttcaaccag
ttcctgcccaccaaggacaagccggcggcctatgtgccagcgccgctccgcaagaagcgg
gccgagcgccacgaggacagccgccggagctgggccagccccatgtacacggaggaagat
ggcaccttcaccagactgctccaaaagcgcgctgttgctaacgacgggagcaaatcaatg
acagaccttgcagtggagcaggcagcactgaagcaggtatgccacgaggaactacagaag
atcagagagcaggtcaaggagaacgaggaccagtggcaggatgacctcaccaagtggaag
aaccgtcgcaagagcgtcaactctgatattgtgaagaagaaagaggagagggagcagatt
gagcagaccacagagagcagcggaggagggagcggtggttccctgaggtccatccggagc
tccatcggcagtcgtctcaactccctcgccgccctggaccaggacgtgtttgaagactcc
gctccggtcctccaaatccgtaccctcccccccaggagctacaccatcgactatccctac
acccccgttgagcgccccagtcccacacccccctctgtgccccacccgagagaggaggac
cccgtccccaccacggcaaccgacagggcctactcaccctccaggggtgacatgagcaac
agtagtgaccgtccctccggttcaggtagcgacatcacaaacaacactaccaccatcggt
cgtacctccaactacaaccgctacgttccgacaccctcggagagagcaccgaccccctcg
gagagagccccgaccccctcggagagagccccgaccccctcggagagagccccaagcccg
gccttgcggtacaccagcgcagccaagatggaggagacctccagcaccaccaccaccccc
agcatcctcccaaaactacccgagcccaggcgcccgtgggcaggcaaggtggctgaagaa
gtgaccacttccactggtggtggttctctgtacaaactacagccactgtacaactcggtg
gcaatggagcaaaagcctgtgcctcccagtgtgtctcgggtttctgcctctctccccagg
agctacatgaaatcggatagtgctcgcctcacctctgtcatcacaccacggcccttcggg
agccagtccacctgcgtcgcatcgctgccacgcgcctacaccaaaagtgtgaacggcgag
atggatgtcacccagaagtcgtcggcccccagccgctatagccaggtcatgacctccgag
gacgaggcacgttcccactccaactctgccaacagcagtggaggagaggaagaggaggag
gaagaagaaaagagagagagggtaaggggagtgaaccccacactggtccctaccctggcc
ccctctcctgtccctcctcaggccaggagtcctttcactgcactccagcccccgaaagtg
gcctcctcagccccggtcggtcctgtacctgcaaaggacacaaacaaggagagctacgct
gacatgcggatcagtctcaaccagaagcccaacagcagtcgagactttggcttccagact
gagtgggactccactggagcacacgtcacctccatccaaccaggcagcccagcggagctg
tgccaactgcaggtgggagacgaggtgctggcggtgagcgggcacagggtggcagagatg
agctacggcgagtggaagagcagcacagagcaggccctgcagcagggcagcctcaccatg
gacatacgtcgccacggcaggaacaactgggacagagacctaccttccctgccgtgcaaa
agccataagaccatcaatctgaccagtatgaatcatcatccaacacttataggttccccc
aacacagccacggttaactcaaccaccagcttggctttcacatctcagggatccatagaa
accaccaaggaaatcgccatccaacaaatcgttgatgtggcatccattggagtgaatgga
ggttcccgtgacaagacggtgaccgtgaaaaacaaagagtctgtagaacccatatctttg
aaaaacttaaaacggaggtcagagttttttgaacaaggaggatcagattctgcgatatca
gatatgcccgttccctccatcgctccctctaaccactggtcctgggacctggaggaggag
cgccggaggcaggagaagtggcagaaagagcaggagcgacttctacaggaaaaatacagc
cgtgaccaggagaaactggaggaggagtggcgtcgagcccagcaggatgctgtgactgac
gggggcagacaccaccaagaagagccgagcagcaagagtatcagcctaccctgccctctc
cgccagcccatcctgccctgggaggaccaggaggaagagaggatgaggaggagggaagag
gaggaggcacagcgaagacaggaggagaagaggagaatggaggacgagcagaggagacag
aggaaagaggaggagctgagatggcaaaggaggaaggaggaagagagggaggaggagagg
aggcaccagaaggctgctaatcaacaacacatggagaatgccagaatgcaggaacagcag
caatgggtgggggactcctgtggctatgccaaggtccagcctgagatatcaatggcagac
agggcaaaatccaaatctactccagagctagatgacgtggagaaaccagagactaaaagc
tggtatggccgctcggggggcatggcccagaagttactggaggaggagttgagacgtaaa
gcagacaaaaaggcccagagtctccaggctgcgtccgagctggagttggagaggagaaac
atcctgaatgccatgcgatacagagagccagaaagagtgactagcagcggtaggctggac
gaggcatcgtggaggaatggccagcagagccagtcccaggcagagctagagaggcagcag
atcctgcaggagatgaagaagaagacccaactgaccacagacaacagctggatccgccag
ggaaataccaccagcaaggaccccactgccagcctcatcagcagaggtgagtctctggac
aacctggacactgcgccccgctcttcttggcgctcatcgtggtcaacctcgtccagcggt
ggtggcaacagcggcagcggggtcggtggtcgtcccagctcagccaccctgccctcctcc
ctctccatgagctcccttagaggggccggggggagcaacccgtcttcctggtcccaatgc
tcgccatcgccatctccctcccccactcctccttctggcctcgaaatcgagtcacgccca
tcctcgcagcaacgcagcaggtcagtgagtggcaagaaagtctgtacgttctgtgacacg
gtcctgggcaagggagccgccatgatcatcgagtccctgggactctgttatcatttgacc
tgtttcaagtgcattgattgcaagtccgacctgggaggatcggaggccggagctgaggtc
agaatacggagccgacagctctactgtaacacctgctacacgcgattcaaaactggacag
ccaacctccatgtga
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