Oncorhynchus nerka (sockeye salmon): 115108102
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Entry
115108102 CDS
T07952
Name
(RefSeq) RANBP2-like and GRIP domain-containing protein 5/6
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115108102
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115108102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115108102
03110 Chaperones and folding catalysts [BR:
one03110
]
115108102
04121 Ubiquitin system [BR:
one04121
]
115108102
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115108102
Chaperones and folding catalysts [BR:
one03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
115108102
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
115108102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
Zn_ribbon_RanBP
IR1-M
TPR_8
TPR_2
TPR_CcmH_CycH
TPR_14
TPR_1
TPR_16
TPR_7
ARM_TT21_C
TPR_11
ANC1_spectrin
Motif
Other DBs
NCBI-GeneID:
115108102
NCBI-ProteinID:
XP_029488358
LinkDB
All DBs
Position
LG1:28530339..28568978
Genome browser
AA seq
3008 aa
AA seq
DB search
MRRNKAEVDEYIYSVESSSPSLKEKPIKGFLFAKLYFEAKEYELAKRHVSAYLKVAERDP
KAHQFLGKLYEREGDINKAIGCYKRSVDLNPAQRDLVLKVAELLVSKTERDNRAEFWVEK
AAKLLPGHLAVFNLKEHLLNQQGQQGWNQLFDLLQAELAVRPGDAHINIKLVQLFSSDGR
LEEAVKHCLATEKRGLLRSSLDWYSTVVHTLQESLAQPSVSSNEKMREHRQRELLLAHCS
LLRLTLQGKGLQPSIQALWSFDCAMQGLKRAEGSVTDDLSGVYVEMRGHLYLHAGTLLLK
MAQEREQQWRAVIDLAALCYLLAYQVPRPKSKVSKRDQSPPQPLELLASDRKSQAGHMLL
NLKPETHTFVREVVEAFGNCSGQGALFELLFGPLAPVGSSFIGNDDIRSINTQAPEISDL
TKWDNGSIQLHGGDLQQLCWLGLQWSLLAQRPALRDWLKQLFPRLNLETSKLDTNTPESI
CLLDLEVFLCGVVWCSHTQLQERVRITSTGQHGPRCLPLPLLHHLFTDRQRDWWDAVYRL
IHKRAAPGMSAKLRMTVQHGLSTLRAGEKHGLQPALPIHWAQHLSSAGFGVNSYYDHEYI
RRSVHYWNVVLPLLDKIKRRRGIPGPLDPLFIHFPSRDIEIPSVKGFEEEAKIAFATLLD
IEGKTEEAIATLETINNISSNWHLARIFQRLSEEAGSGVEETQDRCIMFLRKFRTYLSKI
YNANADDMDKLPVSMEEVMDLLNDVKQQLEESGEAMDEEDDGGPVHSSLQFPKPDASISC
VKFAPLTPSPSKSLVSPSKRHLGGETILRFQISPKTPPHWAEDQKSLLQMLCQQVESLKN
EVHDLRHHSSDSMASPHQRMYGDGYGAESMQEGYPPAQTFHGAPLTVATTQAPSMYYNQS
SAYNAGQYLLRTAANVTPTKAPLYGINRLPPQQHMYAYQQPTNTPPLQSTPACIYPPQDQ
VFGAPLRFESPATSLLSPYSEEYYGHSQPTTNPPLPEPGYFTKPSIVPVQPPKSIEGKPV
GFGKISFGQPIHAEPPKLPSFGAGIVAQSTPSSAAFKFNSNFKSNDGDFTFKSKNNESLL
GLLTSDIPTKSEGPSEGKHQEPPSQGGIFTFGPKSASEFSFADTIQIQDKPNLFGKFDQP
FSFTDVTTPVFGLANTAEEEKGAESNNNSTHVEEDEDGPHFEPIVPLPDKVDVKTGEEEE
EEMFCNRAKLFRFDAETKEWKERGIGLVKILKHNTSGKVRLLIRREQVLKICANHYITPD
MLLKPNAGSDKYWVWNAVDYADEEPRPEQLAIRFKTEDESLLFKTKFEEAQKIVPKSPKM
QQDQSYRKNNFPKLSAPLATNFAAQFAKKYGEWDCNVCCVRNAAKVMQCVACQTANPNAP
SKLDSAPATDIKGFTSGAASVGGFTFGFGADSSKDTSSAGSIGKGFGSFGAQIPSSFTFG
TSGTTYIPAAGFGAQFGKRQETTKVAAESKPSTMPFGSGFGVQFGINPGQWDCDTCTLRN
EAFANSCLSCQTPRPSEKPAAVSPALATLSIGSGFGAQFGKKPGQWECDTCLVRNEESAS
SCVSCQTPNNVAKTDVDGAAESKPSTMPFGAPALATLSIGSGFGEQFGKKPGQWECDTCL
VRNEESASSCVSCQTPNPTAKSTVEVAPTTEPTVSDFGAAFSRKDGQWDCDTCLMRNDAS
ASKCVSCQTPNPNASSSSLRAMFARQEGQWDCDACLVRNNDSASQCVSCQMPNTNVKSIV
TAATASSSFSFNFGSRTASTQPTGTGFKANFNGDSSLQFGTGKVDKSSPASFKFETPPQA
ESSTPSAAGFSFTMPIPAGGFKFGTQETAKETLPAETQTPSSGSASMFLKNIVEQHREKE
SGVGVYPSVLSVDKTGQDENPLFIGKPNDFSFADLAKNSQGDFQFGQTDSNFKGFTRAGE
QLFTSLQSNQRADTSADQDEEGIYKTEDNDDIQFEPVVQMPEKVDLVTGEEDEQALYSQR
VKLFRFDGDISQWKERGVGVLKFLKNATNGRLRVLMRREQVLKVCANHWITTTMNLKPLA
GSDKAWMWLANDFSDGDARLEQLAAKFKTPELAEEFKLKFEECQRLLLDIPLQTPHKLVD
TGRTAHLIQKAEEMKSGLKDLKSFLTDDKTKIKEDDSHANITTASNPSGLNIKPHAENTG
PTLEWDNYDLREEALDDSADTSVYALPLASSPIRKNLFCFGESTEGFNFSFQPVVSPAKS
LAKMNQSGVSADEEQDISQEEERDGLYFEPVVPLPDLVEISTGEENENVCFSHRAKLYRY
DKDLNQWKERGIGDLKILQNCDTKRVRLIMRRDQVLKICANHWVTSSMKLEPMKGAEKAW
VWSAIDFAEVTKGNVEQLAVRFKLKDVANSFRDIFDQAKTAQEKEILVTPMASSETLTQE
EAIATGTTVCGQAAVAILEETTTERTELYHETLHTPDCKSSTGTPHSPLNLSRMVMSPPK
FLFGTDSLQKFLGSSPPSSKEDSSPESSKVKDSGRTSQPLTAFKISEKAPSHAEANSEVE
VVYVRQPTVEQVLLARELLLPLTFFCYQNEPGYTSDDQTDDEDFETAVKALNGKLYRDPP
EREAASAGSGQAEAGVKGLDPEVEVLWEKRPTPEEEQKARNLQLPSTFFCGVGSDGEAEK
DKPEDFETEFRKAQEALDAERSSEPVSSEDVSSSTGDTVPEQQVPDQYPSSQEQASDQSE
AEVQSTTAVKQVPVQSLAIQEVEFSAQGSQEQATEQSVTIQSSTAEEQVSVQSLTIQEAE
VHSSTKEQQTPDQSDSTSTPSQTAVSRSREQATTPNPSEKPAASPPALVTPSFGFGFGAQ
FGKKPGQWECDMCLVRNEESASSCVSCQTLNPAASSGKQAPDQSDSTPTAISSSPIDLSA
KKTSEPDSNTTFTTTTTRDAPNSFGSLGFSALGGEGFSFADLAQNTGGEFAFGKQDSNFS
FANAGATLFGAAAPAKAEGGEEECDEGDTNNVGIDFEPIVSLPEVETKSGEEDEEILECA
YHAASECA
NT seq
9027 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgaaataaggccgaagtggacgaatatatttattcagtagagagttcctctcct
tcactcaaagagaaaccaattaaaggatttttatttgctaaattatacttcgaggctaag
gagtatgaacttgctaaaagacatgtatcagcatatctgaaggtggcagaaagagacccc
aaagcacaccagttcctgggcaaactttatgagagggaaggagatatcaacaaggccata
ggatgttacaagcggtctgtggacctgaacccagcccagagggacctggttttgaaggtg
gctgagctgctggtcagtaagaccgagagagacaacagagcagagttctgggtggagaaa
gctgccaagctgctgcctggacaccttgctgtcttcaacctcaaggagcacctactgaat
caacagggccaacaggggtggaaccagttgtttgacctactgcaggcagagctggctgtg
aggcctggtgatgcccatatcaacatcaagctggttcagttgttctcctccgatggcagg
ctggaggaggctgtcaaacactgtctggccacagagaagagaggcctgcttagatccagc
ttggattggtactctactgtagtacacactctgcaggaatccctagcccagcccagtgtt
tcgtccaatgagaagatgagggaacatcggcagagagagctacttttggcacactgcagc
ctgctgagactgactctgcaggggaaaggactgcagcctagcatccaggccctctggagt
tttgactgtgcgatgcagggcctgaagagggcagagggcagtgtaacagatgatctgtct
ggggtctatgtggagatgaggggacatctgtacctgcatgctggcactctgctgctgaag
atggctcaggagagagaacagcaatggcgggctgtcattgatctggctgctctctgctat
ctgctggcctaccaggtccccaggccaaagagcaaggtgtctaaacgtgaccagtctcct
cctcagcctctggagctgctggctagtgacagaaagagccaggctggacacatgctgctc
aacctcaagcccgagacacacacctttgtcagagaggtggtggaggcgtttgggaactgt
agtggtcagggtgctttgtttgagttattgtttgggcctctggctccggtcgggtcttcc
ttcattggcaacgatgacatccgctccatcaacacacaggctccagagatatctgacctt
accaaatgggataacggctccatccagctccatggtggggacctccagcagctgtgttgg
ctgggcctccaatggtctctcttggcccagaggcctgctctgagggactggctcaaacag
ctgttccccaggctcaacctggagacctccaaactggacaccaacacaccagagtccatc
tgcctgctagacctggaggtgttcctgtgtggggtggtgtggtgcagtcacacccagctc
caggagagggtcaggatcacttctactggtcaacatgggccccgctgcctgcccctgccc
ctcctccaccacctcttcacagacagacagagggactggtgggacgcagtctacaggctc
attcacaaacgagctgcgcctggcatgtcagccaaactgaggatgacggttcaacatgga
ctaagcaccttgcgagccggagagaaacatggccttcaaccagccctgcccatacactgg
gcccagcacctcagctcagcagggtttggtgtgaactcatactacgaccacgaatacata
aggcggagtgtccactactggaacgtggtgctccccctgctggacaagatcaagaggaga
cgtggcatccctggacccctggaccccctgttcatacacttcccttctagagacatagag
atcccatcagtgaagggctttgaggaggaggccaagatagcatttgcgaccctcctggac
atcgaggggaagacagaggaggctattgctaccctggagaccatcaacaacatctcgtct
aactggcacctagctaggatcttccagcgtctgtctgaggaggccggtagcggggtggag
gagacacaggacaggtgcatcatgttcctcaggaagttcaggacttacctgtccaagatc
tacaacgccaacgctgacgacatggataagctgcccgtttcgatggaggaggtgatggat
ctcctgaacgatgtgaaacagcagctggaggagagtggagaagcgatggatgaagaggac
gacggcggaccggtccactccagccttcagtttcctaagcctgatgcttcaatctcttgt
gtcaaattcgccccattaaccccctcccccagcaagagcttggtctctccctccaaaaga
cacctggggggggaaactatcctccgtttccagatttccccaaagacaccacctcattgg
gcggaggaccagaagtccctcctgcagatgctctgccagcaggtggagagcctcaagaat
gaggtccatgacctgaggcatcactcgtcagacagcatggcgtcaccccaccaaagaatg
tatggcgatgggtacggggctgagagcatgcaggaggggtaccccccagcacagaccttc
catggagcacccctcactgttgccaccacacaggcaccctctatgtattacaatcaatcc
tctgcttataatgccggacagtatctccttcgtacggcagccaatgttactccaacaaag
gctcctttgtatggaatcaaccgcctgccaccccagcagcacatgtatgcctaccagcag
cccacaaacacacctcccctacagtcaacaccagcctgcatctaccctcctcaagatcag
gtcttcggcgcccctctccgcttcgagtcaccagcaaccagtctactctccccatacagt
gaggaatactacggccactctcagcccaccacaaaccctcccctcccagagcctggttac
ttcaccaagccctccattgtacctgtccaaccaccaaagagcatagaggggaagcctgtt
ggctttgggaagatctcttttggccagccgatccatgctgagcctcctaagttgcctagc
tttggtgctggaatagtcgcccagtccactccatcatccgctgcctttaaattcaactcc
aactttaaatccaatgacggggacttcaccttcaagtccaaaaacaatgagagcctgttg
ggtcttctgacgtcagacattcccaccaaatctgagggtccctcagaggggaagcaccaa
gagcctcctagtcagggagggatttttacctttggccctaaaagtgcgtctgagttctcc
tttgctgacacaatccagatccaggacaaaccaaacctgtttggaaaatttgaccagcca
tttagtttcactgatgtaaccacgccggtatttgggctggcaaacacagcagaggaggag
aagggagccgagagcaataacaacagcactcatgtggaggaagacgaggatgggcctcac
tttgagcctattgtgcccctccctgacaaagtagacgtgaagactggagaggaggaagag
gaggagatgttctgtaacagggccaagctgttcagattcgatgcggagacaaaagagtgg
aaagagagaggtattggcttagtcaaaatcctaaagcacaatacatcagggaaagtgcgt
ctgctgataagaagggagcaggttctgaagatctgcgctaaccactacatcacgccagat
atgctcctgaaaccaaatgctggatctgacaagtactgggtctggaatgccgttgattat
gcggatgaggaaccaaggcctgagcaactggccatccggttcaaaacggaagacgagtca
ttgctcttcaagacaaagtttgaagaggctcagaagatcgttcccaaatctccaaaaatg
cagcaagatcagtcatataggaaaaataattttcctaaactctctgctccattggcgaca
aactttgctgcccaatttgcaaagaagtacggggagtgggactgcaatgtgtgctgtgta
agaaatgcagctaaagttatgcagtgtgttgcctgccagactgccaaccctaatgcccca
tcaaagctggacagcgcaccggctactgacatcaaagggtttactagtggggcagcttca
gtgggaggatttacttttggatttggagctgactcatcaaaagacaccagcagcgcagga
tctattggaaaaggatttgggtcttttggagctcagataccctcctcctttacgtttgga
accagtggcaccacttatatacctgctgctggttttggtgcccagtttggaaagaggcaa
gaaaccacaaaagttgcagcagaatcaaagccctcaaccatgccatttggctctggattt
ggtgtgcagttcggcataaatccagggcaatgggactgcgatacatgcactttaagaaat
gaggcatttgcaaacagttgtctctcttgtcaaactcctagaccttcagaaaaacctgct
gctgtttccccagctttggcaaccctctcaattgggtctggatttggtgcacagtttggc
aaaaaaccagggcagtgggagtgtgacacgtgtcttgttagaaatgaggagtctgctagc
agttgtgtttcttgtcaaactccaaacaatgtagccaaaacagatgtagatggagcagca
gaatcaaagccctcaaccatgccatttggtgccccggctttggcaaccctctcaattggg
tctggatttggtgaacagtttggaaaaaaaccagggcagtgggagtgtgacacgtgtctt
gttagaaatgaggagtctgctagcagttgtgtttcttgtcaaactcctaaccctacagca
aagtcaacagtagaggtagcaccaacaacagagccaacagtgtcagactttggtgctgct
ttttcaaggaaggatggacaatgggactgtgacacctgtctaatgaggaatgatgcatct
gcctctaagtgtgtttcctgccagacacccaaccccaatgctagcagctcctctcttagg
gccatgtttgccaggcaggagggacagtgggactgtgacgcatgtctagtcagaaacaac
gactctgctagtcaatgtgtctcctgtcagatgcccaataccaatgttaagagtatagtc
acagccgccactgccagctcatccttcagctttaacttcgggagtcggactgcctctact
caacccacaggcactgggtttaaagcgaacttcaacggtgacagctctttgcagtttggc
acaggcaaagttgataaaagttcccctgcatccttcaagtttgagacccctcctcaggct
gaaagcagtacccccagtgctgcaggcttctctttcaccatgcccatcccagcaggtggc
tttaagtttggcactcaggaaactgcaaaggaaaccctaccagctgaaactcagactcct
tcttcagggtctgcgtcaatgttcctgaagaatatcgtagagcagcacagagagaaggaa
tctggtgtcggtgtatatccatcagtgctgtcagtggacaagacgggtcaggatgaaaat
cccctcttcattggcaaacccaacgacttcagttttgcagacttggctaaaaattcacaa
ggagacttccagtttggtcagactgactccaatttcaaaggcttcacccgcgctggtgag
cagctgttcacatcccttcagtcaaaccagagggcagacacctcagctgaccaggatgaa
gagggcatatacaagacagaggataatgacgatatccagtttgagcctgtggtccagatg
ccagagaaagtggacctggtcacaggagaagaggacgaacaggccctctactcccagaga
gtgaagctcttcaggtttgacggagacatcagccagtggaaggagaggggcgttggggtc
ctcaagttcctgaagaacgccaccaatggcaggctcagggtgctgatgaggagagagcag
gtcctgaaggtgtgtgccaaccactggatcaccaccaccatgaacctgaagcccttggct
ggctccgacaaggcctggatgtggctggctaatgacttctctgatggagatgccagactg
gagcaactcgctgccaagtttaaaacccctgagctggctgaggagttcaagctgaagttt
gaggagtgtcagaggctcctgttagacatcccactgcagactcctcacaagcttgttgac
acaggcagaactgcacatctcatccagaaggcagaggagatgaagtccggcctgaaagat
cttaaatctttcctgaccgatgacaaaaccaagatcaaggaggacgacagccatgctaac
atcacgacagccagtaacccctctggtctaaatatcaagccccacgcagagaacactggc
cctaccttagaatgggacaactatgacctgagagaggaggctctggacgacagtgctgac
acctctgtctacgccttacccctggcaagcagcccaatcaggaagaacctcttctgcttt
ggagaatccacagagggtttcaacttcagcttccagcctgtcgtcagtcccgccaagtcg
ctggccaagatgaaccagagcggggtgtctgcggacgaggagcaggacattagccaggag
gaggagcgggacggcctgtactttgagcctgtggttcccctgccagacctggtggagatc
tccactggagaggagaatgaaaatgtgtgtttcagccatagggcaaagctgtatcgctat
gacaaagacctgaaccagtggaaggagaggggcatcggagacctcaagatactgcagaac
tgcgataccaaacgagtcagactcatcatgaggagagaccaagtcctgaaaatctgtgcc
aaccattgggtcacatcttctatgaagttggagcccatgaagggtgctgagaaggcctgg
gtctggagcgctattgactttgccgaggtaactaagggaaatgttgagcagttagctgtg
agattcaaactgaaggatgtggctaactccttcagagatatatttgaccaggctaaaact
gcccaagagaaagagattctggtcactccaatggcctccagtgagacccttactcaggag
gaagcaatagcgacggggacaaccgtgtgtggacaagctgctgtggccatcctggaggag
accaccacagaacggacggagctgtatcatgagactttacacacccctgactgtaagtcc
tccaccggtactccacatagccctctcaacctctccaggatggtgatgtccccacccaag
ttcctctttggaacagactctctccaaaagtttttgggcagcagcccaccatcatccaag
gaggatagttctccagagagctccaaggttaaagacagcggtcggacctcccagccttta
actgcattcaaaatctcagaaaaagcaccctcccatgcggaggccaacagtgaggtggaa
gtggtttatgtgaggcagccaacagttgagcaggttctactggctagggaactcctgctg
cctctcaccttcttctgctaccagaacgaaccaggatataccagcgacgaccagactgat
gatgaggactttgagacagcagttaaagccctgaatggaaaactgtaccgggatcctcct
gagagagaggctgcaagtgcaggttctggccaggccgaggcaggtgttaaaggtctggac
ccggaggttgaggttttatgggagaagaggccaactccagaggaggaacagaaagccagg
aacctgcagctgccttcaaccttcttctgtggtgtaggcagcgacggcgaggcagagaag
gacaagccagaggactttgagacagagttccgcaaagcacaggaggctctggatgctgag
agaagctcagaacctgtttcatctgaggatgtgtcctccagcaccggcgatacagtgcca
gaacaacaggtcccagaccagtaccccagcagccaggaacaggcttcagatcagtctgag
gcagaagtccagtccactacagcagtaaaacaggtcccagttcagtccttagccatccag
gaggttgaattctcagcccaaggtagccaggaacaagccacagaacagtcggttaccatc
cagtcctctacagcagaagaacaggtctcagttcagtcattaaccattcaggaggcagag
gtccattcctctacaaaggagcagcagactccagatcagtcagactccacttcaacacca
tcgcagactgccgtctcccgcagcagggagcaggctaccactccaaacccttcagaaaaa
cctgctgctagtcccccagctttggtaaccccctcatttggttttggatttggtgcacag
tttggcaaaaagccagggcagtgggagtgtgacatgtgtcttgttagaaatgaggagtct
gcaagcagttgtgtttcttgtcaaactctaaaccctgctgccagcagcgggaaacaggct
ccagatcagtcagactctactcctacagctattagcagcagccctatagacctgtctgcc
aagaagacctctgagcctgactccaatactacctttactacaaccactactcgggatgct
cctaactcatttggctcattgggcttcagtgctctaggaggggaaggattctcctttgct
gatctggcacagaacactgggggggaatttgcctttggaaaacaagattccaacttctcg
tttgcgaacgctggggctacgttgtttggagctgcagccccagccaaagctgagggaggg
gaggaggagtgtgatgaaggggacactaataatgtgggcattgactttgaacccatagtc
tctctaccagaggtggagactaagtcaggggaggaggatgaggagatccttgaatgtgcc
taccatgctgccagtgaatgtgcctag
DBGET
integrated database retrieval system
