Oncorhynchus nerka (sockeye salmon): 115108130
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Entry
115108130 CDS
T07952
Name
(RefSeq) polypyrimidine tract-binding protein 1-like isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115108130
03041 Spliceosome [BR:
one03041
]
115108130
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
115108130
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115108130
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
115108130
NCBI-ProteinID:
XP_029487987
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All DBs
Position
LG24:complement(36302194..36326276)
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AA seq
583 aa
AA seq
DB search
MDGRLETDLYPMGSTYVTELDSVHDITVGTKRGSDELFSCVANGPYIMTSAAANGNDSKK
FKGDIRGPGIPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEDA
AQTMVSYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQAGGMPMAG
GMPMAGGMPMAGVDASGGMGGHSPVLRVIVENLFYPVTLDVLHQIFSKLGTVLKIITFTK
NNQFQALLQYSDGLTAQHAKLSLDGQNIYNACCTLRINFSKLTSLNVKYNNDKSRDYTRP
DLPTGDSQPSIDHQAMAAAFGEYYGAPGIISANPYAGAHAFPPAFAIQQATGLTMHGVPG
GLAQLTMPVAAAAAAAGRMGFHQLSGGHCVMLVSNLNPERVTPQCLFILFGVYGDVMRVK
ILFNKKENALIQMSDGTQAQLAMSHLNGQRLHGKALRVTLSKHTNVQLPREGHEDQGLTK
DYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLKMLFASSGAMVKAFKFFQ
KDRKMALVQMSSVEEAIESLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgtctagagactgatttgtatcctatgggatctacttacgtcactgaatta
gacagtgtccacgatataacagttggtacaaagagaggatcagacgagctattctcctgc
gtggcaaacggaccctatataatgaccagcgcagcagccaatggcaacgacagcaagaag
ttcaaaggtgacataaggggcccgggcatcccgtcgcgtgtcatccatgtgcgcaagctc
cccaacgacatcaacgaggccgaggtcatctccctgggcctgccctttggcaaagtcacc
aacctgctcatgctcaaaggaaaaaaccaggccttcatagagatgaacacagaggatgca
gctcagaccatggtcagctactactcctcggtgacgccggtcatccgcaaccaccccatc
ttcatgcagtactccaaccacaaggagctcaagacggacaactcccccaaccaagtgaga
gcccaggcggcactgcaggcagtgaacgcagtccaggcagggggcatgcccatggcaggg
ggcatgcccatggcagggggcatgcccatggcaggggtggatgcctcagggggcatgggc
gggcacagccctgtgctgcgcgttatagtggagaacctgttctacccagtcaccctggac
gtgctgcaccagatcttctctaagctcggcacagttctgaagattatcacctttaccaaa
aacaaccagttccaggccctgctgcagtactcggacggtctgaccgcacagcacgctaaa
ctgtctttagatgggcagaacatctacaatgcctgctgcaccctccgcatcaacttctcc
aagctgaccagcctgaacgtgaagtacaacaacgacaaaagccgcgactacacgcggcct
gacctgcccacgggagacagccagccctccatcgaccaccaggccatggctgcagccttc
ggtgagtactatggtgctcccgggatcatctcagccaacccatacgcaggagctcatgcc
ttccccccggcattcgccattcagcaagctacaggcctgacgatgcacggtgtccctgga
ggcctggctcaactgaccatgcctgtggctgcagccgcggcggctgcaggcagaatgggc
ttccaccaactctccggtggccactgtgtcatgctggtcagcaacctcaacccagagaga
gttacgccccaatgcctctttattcttttcggtgtatatggtgacgtgatgagagtgaag
atcctgttcaacaagaaggagaacgctctgatccagatgtctgatgggactcaggcgcag
ctagcaatgagccacctaaatggccagaggctccacgggaaagcgctgcgtgtcaccctg
tccaaacacaccaatgtccagctgccccgcgagggccatgaggaccagggcctgacaaag
gactacagcaactcacccctgcaccgctttaagaagcccggctccaagaactactctaac
atattccctccctcagccaccctgcacctctcaaacatccctccctctgtggttgaggat
gacctcaagatgctgtttgcgagctccggtgcaatggtcaaggccttcaagttcttccag
aaagaccgcaagatggccttggtccagatgagctcagttgaggaggccatagagtccctc
atcgagttccacaatcacgacctgggtgagaaccaccacctgagggtctccttctccaaa
tctaccatctga
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