Oncorhynchus nerka (sockeye salmon): 115108151
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Entry
115108151 CDS
T07952
Symbol
nwd1
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115108151 (nwd1)
Domain-containing proteins not elsewhere classified [BR:
one04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
115108151 (nwd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
NACHT
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
AAA_16
DUF4062
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
NPHP3_N
PEP5_VPS11_N
WDR90_beta-prop_4th
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
AAA_22
NPHP3
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_VPS8
WD40_like
Nucleoporin_N
AAA_25
AAA
ATPase_2
Beta-prop_IP5PC_F
Beta-prop_SCAP
Viral_helicase1
Beta-prop_WDR19_2nd
AAA_18
RuvB_N
AAA_11
nSTAND3
AAA_33
AAA_30
NTPase_1
AAA_14
RNA_helicase
AAA_28
AAA_19
cobW
AAA_17
Motif
Other DBs
NCBI-GeneID:
115108151
NCBI-ProteinID:
XP_029488034
LinkDB
All DBs
Position
LG24:36869984..36888717
Genome browser
AA seq
1652 aa
AA seq
DB search
MASPRGALMEVLRGQATEGLKLRSNVVRVFVSSTFTDMSSERNALLDKTYPELQAFCQSL
GLVFEVVDMRWGLQDAIAVDHMTTELCLQEIEACKKVSVGPSFIALLGNRYGHRPIPRVL
PGKQFEVLLSKLPQDQVGLLHQWFRKDNNAVPPVYVLQPITTLLPHYNDLQPERRPLQDD
SVISWRYTEARLLQLLRTAAVQAEKDGDITVEQKHQFFKSVAEHEIEEGLRIPDGDESEP
SAILFVRELPHLRKKDGPKRLAQYMDVTADGLLDTEAQELLSGLKSRLFAASPGMLNLHS
VELCKGAIEPSCKEHAQYLESLCEQLVSQTKARIARRVGAGSSVEAGEVRTNGARGGDAS
QRKGEEDRGWLLQELSHHMALSAGKCSGVFRGREGLLGKICLAMWEHTNTRHTPLVVHGP
PGVGKTTLLCKLAQEMRGLLDPRAVVVLRLLGTSAESSDLGRVLQSVCFQICSVFSLSPP
TPITAHTSEDLVRFFHGLLAEVSERGDTLLLILDSLDQLSSATQGQKLHWLPKDIPPNVH
LVVSTADTGSPVLANLRRTVEVPGNFFEVEPLSCDQGREIMNAYMREAQRSLTPEQCEVV
LCSFQLSGNPLHLKLLLDMARRWASYTPVTDLALSSSAQEVMSQLLQALEERHGKQLVGA
ALGYIVSARGSLSEAELRDILSLDDNVLAEVYQYWLPPNHSLIRLPPLLWVRLRHDLGEL
LVEGQANGVTVLDFHHKLLTETVRERYQRSEQQADRHRVLAEYFLGSWSQGRFKAVLLPP
LTTTLDADRKVPPQPLWFAEGVANVKKLQELPYHLLHAGLWEELRQEVIGSSEWLYCKTL
TCGVASVIEDLTLCTKLMDCPETQLIRDTFILLKPTLDFLDGQMDTPLFYTEVLARLHSF
AEMYPSLIGRLCCQCHDWLSCCPDPILVPKCTFLQPPGGALKTTLAGFQKGVTALDICPE
RGILLAGSEDGKVIAWDLNDLEVIQTLVGHTAKVLSVRVIDSGAHCLSLAADGSLRKWSL
LSGRQLYCTQEAVSINSLPSTTHIHVSEERALVFTHSGGQVKVWHLNTTELLFQVKDTGV
SIILGFLNGMVVSLSDGGLVTFSHPSAEDKTAQIHLEKSSHSLTLTATLTLQRNGRLLIA
SKEGFLYQVSSTVQGRQSQWTLRQTVTELPVCATFLSASDDERILLAGCERTLVLFHRES
DCVQSFLDLHHEDTVLCACVSSDSRVVVSGSEDQTIRVWSMTTGNLLDCFLGMDAPVTTL
ALYEGTVVSASSSAYYLKLWHLPSPNNPQQRPNCCIPAGCPQVALTKDGDTVYYVRNVGQ
KEVITWNCHTGSSTDTMAVSAEVCCLELAQNKKLLFCGLTTGTVLIYPLAFPKETLCIPP
PETLPTVRCMAIGGQEKHMAVAYEDSVCLFEITARDSFPSVEGPSARFALSLLHSPVSSM
ALLPDCRLLYGTACGEVTMYDFKSASTATLDGHRSRVNCVTTSNWGTHALVGSEDAVQRL
WGLTPLVLDHTMEYKGFLFEGVLCAAFSESDKHVFTGSQDRTIKVWDVASGSLLFVQYVY
APVTKMLTYRNGFVAISQLGYVIKEGFRCPDGVCPEYNPLRNVNAHYRVTSRQKSADSPH
SVITEIPEYNPAQFNFMALMLKSKPSHSCQLL
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgccaagaggagctctcatggaggttctcagaggccaggcaactgaaggactg
aagctcaggtccaacgtggtccgagtctttgtcagctccacatttacagatatgagcagt
gaaaggaatgccttattggacaaaacctatcctgaacttcaagcgttttgtcagagtctg
ggcttagtgtttgaggttgtggatatgagatggggtctccaggatgcaattgctgtggac
cacatgaccacagaactgtgtcttcaggaaatcgaggcttgcaagaaagtatccgtagga
ccaagtttcattgctctgctggggaaccggtatggccaccgccctatcccccgtgtcctc
ccaggaaaacaatttgaggtgctgctgtccaagctaccacaggaccaggtggggcttctc
caccaatggttcaggaaagacaacaatgctgttccgcctgtctacgttcttcagccaatc
acaactctgttgccccactacaatgaccttcagcctgagagaaggccgctgcaggatgac
agtgtcatttcctggcgctacacagaggctcgattattgcagctcctacgcactgcggct
gtgcaggctgaaaaagacggggatataactgttgaacaaaaacaccagttcttcaaatct
gtggcggagcatgagatagaggagggtctgcgaattccagatggggacgagagcgagccc
tccgccatcctcttcgtgcgggagctacctcacttgcgtaagaaggacggcccgaagcgg
ctggcccagtacatggatgtgacggctgatggcctgctggataccgaggctcaggaactc
ctctccggcctcaagtcgcgtctcttcgctgcctcgccgggcatgctcaacctgcacagt
gtggagttgtgcaagggagccattgagcccagctgcaaggagcatgcccagtacctggag
agcctctgcgagcagctcgtgtcccagacgaaggcccgcattgccaggagggttggtgct
ggttcgtcagtggaggccggtgaagtgaggacgaatggggcaagaggaggagatgcaagt
cagaggaagggggaagaggacagaggttggctgctccaggagcttagtcaccacatggct
ttgagtgccgggaagtgttcaggcgtatttcgcggcagggaggggctccttgggaagatc
tgcctggccatgtgggagcacaccaacacccgccacacgcccctggtggtgcatgggcca
ccaggtgtgggcaagacaacgctgctctgcaagctggcacaggagatgcgtggcctcctg
gaccctagggctgtggtggtgctcaggttgctggggacgtcggcagagagctccgacctg
ggccgtgtcctccagagtgtctgtttccagatctgctctgtgttcagtttgtcacctccc
accccaataacagcacacacgagtgaggacctggtgaggtttttccatggccttctagct
gaggtgtcggagcgaggagacacacttcttctgatactagactccttggaccaattgtcc
tcagccacccagggccagaaactccactggctacccaaagacatcccccccaatgtccat
ttggtggtgtccaccgcagatacaggctctccagttttggctaaccttcggagaacagtc
gaggtgccgggaaatttctttgaagtagaacccctatcatgtgaccagggtagagagatc
atgaatgcctacatgagggaagcgcaacgaagcctgactccagaacagtgtgaagtggta
ctgtgtagctttcagctgagtggaaatcctctgcatctgaagctactgctggacatggcc
aggcgatgggcgtcctatacacccgtgactgacctggccctgagcagtagtgcacaggaa
gtgatgtcacagctactccaggcccttgaggagaggcatgggaagcaactggttggcgca
gctttgggatatatcgtttctgctaggggtagtctatcagaggcagagctgcgtgatatc
ttgtcccttgatgacaatgtcctggctgaagtctaccagtactggcttccccccaaccac
tccctcatccgcctcccccctctactgtgggtgcgcctcaggcacgacttgggagaactc
ctcgtggagggacaggccaatggcgtcacggtgctcgacttccaccacaagctgttgact
gaaactgtgcgagagaggtaccagagatcagagcagcaggctgacagacacagggtcctt
gctgagtacttcttgggtagctggagccaaggccgattcaaagctgtcctcctaccccca
ctgacgaccacattggacgctgaccgcaaggtgccccctcagcctctatggttcgctgaa
ggagtggcaaatgtcaaaaagctgcaggagctgccctaccacctcctccacgcaggcctc
tgggaggagctgcgccaggaggtcataggcagtagtgagtggctgtactgtaagactctg
acctgtggcgtggccagtgtcattgaggacctgaccctctgcaccaagctcatggactgc
cccgagactcaactgatccgagacactttcattctcctcaagcccaccctggactttcta
gatggacagatggacacccccctcttctacacagaggtcttggccaggctccactccttc
gctgagatgtacccttcactgataggacgactctgctgccagtgtcacgactggctctcg
tgctgtcccgaccccatccttgtccccaagtgcaccttcctccagcctccagggggagcg
ctaaagacgacgcttgctggtttccagaaaggggtcacagctctggatatttgcccagag
agagggatcctgctggcaggctcagaggacgggaaggtgattgcctgggacctcaatgat
ctagaggtcatccaaaccttagtgggacacacagctaaggtgctatcagtgagagtgatt
gacagcggcgctcactgtctctcattggctgctgacgggagtctgaggaagtggagcctg
ttgagtggcaggcagctgtactgtacccaggaggcggtgtccattaactccttaccttcc
accacacatatccatgtgtctgaggagagggcgcttgtcttcactcactccggaggccag
gtgaaagtatggcatcttaacacaacagaactactcttccaagtcaaagataccggtgtc
tccattattcttggatttttgaatggaatggtcgtctccctctcagacggaggacttgtc
acattttcccacccatccgccgaggacaagacagcgcagatacatttggaaaaatcttca
catagtttgacgctgacggcaacccttacactgcaaagaaatggccgactacttatagca
tccaaggagggcttcctctatcaggtttccagcacggtacagggcagacagtcacagtgg
actctgagacagacagtcacagagcttccagtctgtgcaaccttcctctccgcctcagat
gacgaaaggatacttttggcaggctgtgagaggacactggtccttttccatagagagtca
gactgtgtccagagcttcctggatctgcaccacgaggacacggtgttgtgtgcctgtgtg
tcaagcgacagcagagtggtcgtctcgggctctgaggaccagactatacgggtgtggtct
atgaccacaggaaacctccttgactgtttccttggcatggatgcccctgtcaccactctg
gctctgtatgagggcactgtcgtctccgcctcctcctcagcctactacctgaagctgtgg
catctgccctcacccaacaaccctcagcagagacccaattgctgcattccagccgggtgc
cctcaggttgccctcactaaagatggtgacacggtgtactatgttagaaacgtaggccag
aaagaagtgattacatggaattgtcacacaggctcttccactgacaccatggccgtctct
gctgaggtgtgttgcctagagctggcccagaacaagaaactcctcttctgtggcctcacg
actggcacggtcctcatctaccccctagccttccccaaagagaccctgtgcatcccacct
cctgagaccctgcccacggtgcgttgcatggccattggcggccaggagaagcacatggcc
gtggcctacgaggactcagtgtgtctgttcgagatcacggccagggacagtttccccagc
gtggaggggccctccgcgaggtttgccctatccctgctccactcgcccgtctcctccatg
gccctgctcccagactgtaggctgctgtacggaacggcctgcggggaggtcaccatgtac
gacttcaagtccgcctcaaccgccaccctggatggccaccgcagcagggtcaactgcgtg
acgaccagcaactgggggacgcacgccctggtgggctcagaggacgccgtgcagaggctg
tgggggctgacccccctggtgctggatcacaccatggagtacaaggggttcttgtttgaa
ggggttctctgtgcagcgttctctgagagtgacaagcacgtcttcactggctcacaggat
agaactattaaagtctgggatgttgctagtgggagtctgttattcgtccagtacgtctac
gctcctgtcaccaaaatgttgacctacaggaatggctttgtggcaatctctcagctgggc
tacgtcatcaaggaaggattccgctgtccggatggcgtctgtccggaatacaacccactc
cggaacgtcaacgcacactacagggtcacgtcccggcagaagagtgcagacagccctcac
agcgtcatcacagagatccctgagtacaatcccgctcagtttaacttcatggccctgatg
ctcaagagcaaaccctctcactcatgccaactgttgtaa
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