Oncorhynchus nerka (sockeye salmon): 115108227
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Entry
115108227 CDS
T07952
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03420
Nucleotide excision repair
one04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115108227
09124 Replication and repair
03420 Nucleotide excision repair
115108227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
one03051
]
115108227
03400 DNA repair and recombination proteins [BR:
one03400
]
115108227
Proteasome [BR:
one03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
115108227
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
115108227
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
UBA_3
Ubiquitin_2
Crinkler
Rad60-SLD_2
UBA_2
Motif
Other DBs
NCBI-GeneID:
115108227
NCBI-ProteinID:
XP_029488185
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Position
LG24:39651614..39664216
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AA seq
488 aa
AA seq
DB search
MLSITLKTLQQQTFKIEIDPELTVKALKEKIEVEKGKVGYPAAGQKLIYAGKILNDDIPL
KDYKIDEKNFVVVMVTKPKPPAPQQISPQATPAPASSPAPAPAPPVVSGLSLSDMTCSTS
PAPMENSTLSPTPTPAPASNPTKSVEPSTPPSPAPAPASIPPEALGANAAPAPAAAACRV
PVSPSEDKPHGEHPELPLATTPALSSSSLVDDLSLLEEAASILVTGQAYENLVSEIMSMG
YEREQVIAALRASYNNPDRAVEYLLMGIPSEADLQPVEALQHRVLANLNPTAAVPAPASA
PASAPASAPASDPATDIAQHPPAATSAVSSTQQPPSSGGLTGGLTGGLTGGLTGGGTGGG
NPLEFLRNQPQFQQMRQIIQQNPTLLPALLQQLGRDNPQLLQQITQHQERFVQMLNEPQG
GEMVEEGAEAQGAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL
LQQTFDDE
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccataacgttgaagactcttcagcagcaaacgtttaaaatcgaaatagatcca
gaactaaccgtaaaagccctgaaggagaagattgaggttgagaaagggaaggttggctat
ccagccgcagggcaaaagctcatctatgcaggcaaaatcttgaatgatgacataccttta
aaagactacaaaattgatgagaaaaactttgtggttgtcatggttacaaagcccaaacct
ccagctcctcaacagatttctcctcaggcaaccccagccccagcctctagccctgctccc
gcccctgcgcctcctgttgtttctgggctgtccctgtcagacatgacctgttctacttct
cctgcccccatggagaactcaaccctctcccctacacccacacccgcccctgcctcaaac
cccacaaaatcagtggagccctccacacccccatcccctgcaccagcccctgcttctatt
ccccctgaagctctgggggccaatgcagccccagctcctgccgcagcagcatgccgcgtc
cctgtctcaccctcagaggacaagcctcacggggagcaccccgaactgcccctcgccact
acgccagccctctcctcctctagccttgttgatgacttaagtctcttggaagaagcagca
tcgatactggtgacaggacaagcgtatgagaatctggtgtctgaaatcatgtctatggga
tatgaaagggagcaggttattgcagcgctgcgagccagttacaacaacccagacagagcc
gtggagtacctgctaatggggattccgtccgaggctgatcttcagccagtggaagcgctc
caacacagagttctggccaacctcaatcccactgccgcagttcctgccccagcctctgct
ccagcctctgctccagcctctgctccagcttcagatccagccacagatatagcccagcac
ccaccagcagccaccagcgcagtgtcttcaacccagcagcccccctcgtctggtgggctg
actggtgggctaactggtgggcttactggtgggcttactggtggaggtactgggggtggg
aaccctctggagttcctgaggaaccagccacaattccagcagatgagacagatcatccag
cagaacccaactcttcttcctgccctgctccagcagctgggcagagataacccccagttg
ctgcagcaaattacccagcaccaggagaggtttgtgcagatgctgaatgagcctcaagga
ggagagatggtagaggagggagctgaggcccagggggcgccacagactaactacatccag
gtcaccccacaggagaaggaggccatcgagaggttgaaagccttgggatttccagaggga
cttgtcattcaagcatattttgcatgtgagaagaacgagaatctagctgccaattttctg
ctccaacaaacatttgatgacgagtga
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