Oncorhynchus nerka (sockeye salmon): 115108290
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Entry
115108290 CDS
T07952
Name
(RefSeq) DNA-directed RNA polymerase, mitochondrial-like isoform X1
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
one03029
]
115108290
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115108290
Mitochondrial biogenesis [BR:
one03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
115108290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
PPR_2
PPR_3
Motif
Other DBs
NCBI-GeneID:
115108290
NCBI-ProteinID:
XP_029488302
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All DBs
Position
LG24:complement(42141462..42234355)
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AA seq
1339 aa
AA seq
DB search
MSLLRLCAFPKCLSGRILLEISVRRVPYVDHCLTIRNNIERHISEPPWTSQRRHFSALIP
KKEDGKKRVWEQSQLLDVLEARIQQLQSDVIVDVQQEKVQFVKASKSGIGASSGNSPKNV
FGERTEVPKAGQTVSKGGGQAVKGESKDASASKSRWMEKLSQEKKTKTKKLKQKLGLEDK
PVKSSKGKLMLPGTSHKTISTKAGIKTASTVKKSKSLKNQEHTMAASKHEHSMAAAPVAA
ANVPIRKAKGKGKASKEPAPELSEARNRAEEMERKAEAKARELAEVEELERKLNQWAVSA
RPELVQDNSEARVYGDVQRSVRCYLEACVFCGDIDRAHRFLLSHHRMVSRRNLLNIGLYN
IMMRVWAKKGSLNQIGRMFILIEEAGLKPNLGSYCAALECMGRNPDCSPHVINRVLRQME
EDGLPVDELFSHCVFRQDERDMVLRAIHTVQPDFQSSINTILQTCSSPLVKDFYTERADA
KYPKMAFSLEELQERFSRQLSIEQASTITIHSVEAMKPVTSHMAKMRDLLAVQRLVWHKA
LVGALREGKIILASSTQKAVRLSLYPYLCLLDEKDYVDIMIQSLSNLPPSGESLHILAKE
LGNRVHNRFCIRMKGHNQMVDKLSHIYNEYTELLAKDSKEFDVLPRERWWKLEAEHSSGP
SLLGDETHWPHMVVVELGTYLVDLMVKHMKVNSDLLNSAYDRKLIPVLYHMYTFRSNKQV
GFIKPHPILTQMQQDAMDTTLTFDSYVMPMLCPPVPWTSAKFGAYLLTPTKMMRAVEGAN
QHEILLEKCQDADLHAVLDSLNQLGNAAWRINQPLLDIIISIFNDKGSEKLDVPPPNSEA
PKIPRYNQQDSATFTSAEKAHLKREVVNAKKKCSEMHSLRMDALYKLSIANHMRDEVFWF
PHNMDFRGRTYPCPPYFNHLGSDVTRAVLVFAEGKPLGPGGLQWLKIHLVNLTGLKKRSS
LAGRLEYANTIMEDILDSADNPLIGKKWWQNADEPWQTLACCMEIANAVRSPDPTHFISH
FPVHQDGSCNGLQHYAALGRDVIGATSVNLIPCEVPQDVYSGVAQQVEEFRVRDAEKGLK
IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYVWDASHYLVHQV
FSSLKEMFTGTREIQDWLTESARLISKSGSTVEWVTPLGLPIIQPYHRSRTQMLKATIQY
LSFQITHDSKERPDTVKQKNAFPPNFIHSLDSTHMMLTALYCYSAGLTFVSVHDCFWTHA
ITVDTMNKVCREQFVALHSQPILQELSNFLLKKYCSGLQSEVKSKKFLEYRRMLLLLAKV
PQTGNFDLQRVKESTYFFS
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttttgagactctgtgcctttccaaagtgtctgagtggtcgcatactgttggaa
ataagtgttcgtcgcgtgccatatgttgaccattgccttacaatccggaataacattgaa
aggcacatttcagagccaccatggacatcacaacgaagacatttctcagctctgatccca
aagaaagaagatgggaaaaaacgagtatgggaacaatctcagctgctggatgtgctcgaa
gccaggatccagcaactccaatctgacgtcattgtagatgtccaacaagaaaaggtgcaa
tttgttaaagcttccaagtcagggataggggcttcttcagggaacagtcccaagaatgtg
tttggggagaggactgaggtgcccaaggcgggacagactgttagtaagggagggggacag
gctgttaaaggagagagcaaagatgcatcagcctccaaatcccgctggatggagaaactg
agccaggagaagaagactaaaacaaagaaactgaagcagaagctaggcctagaggataaa
cctgtgaaaagcagcaaaggcaaactgatgctaccaggtacctcacataaaaccatatcg
acaaaagcaggaataaagactgcatcaactgttaaaaagagtaaaagtctgaaaaaccaa
gagcacaccatggcagcttcaaagcacgagcacagtatggcagctgcaccggttgctgct
gctaatgtgcctattagaaaagccaaagggaagggtaaagcctcgaaggagccggctcct
gagttgtcggaggccaggaacagggccgaggagatggagaggaaggctgaggccaaggcc
cgggagctggcagaggtggaggagctggagaggaagctgaaccagtgggctgtgtcggcc
agacctgagcttgtgcaggataacagcgaggccagggtgtacggcgacgtccagcgcagt
gtgcgctgctacctggaagcctgtgtgttctgtggggacatcgacagagctcaccgcttt
ctgctcagccaccaccgtatggtcagccgacgcaacctgctcaacataggactctacaac
atcatgatgagggtctgggccaagaagggctctttaaaccagattggccgtatgttcatt
ctgatagaagaagctggtctgaagcctaaccttggctcttactgtgctgctctggagtgt
atgggtcgaaaccctgactgttcgccacatgtcatcaacagggtcttgcgtcagatggag
gaggatggcctgcctgtggacgagctgttcagtcactgtgtgttcaggcaggatgagagg
gacatggtgctcagagccatccacaccgtgcaaccagacttccagtccagcatcaacact
atcctgcaaacctgctcctcaccactagtcaaagacttctacacagagagggcagatgct
aaataccccaagatggccttcagcctggaggagctgcaggagaggtttagccgtcagctg
agcatcgagcaggccagcaccatcaccattcactctgtggaggccatgaagcctgtcacc
tcacacatggccaagatgcgggaccttctggcagtgcagcggttagtgtggcacaaagcc
ctggttggggccctgagggagggcaagataatcttggccagcagcacccagaaagccgtc
agactcagcctctacccctacctctgtctgctggatgaaaaggactatgtagacatcatg
atccagagtctgtccaacctgcctcccagtggggagtctctccacatcctggccaaggag
ctaggcaaccgggttcacaacaggttctgcatccgcatgaagggacacaatcagatggtg
gacaagcttagtcatatctacaatgaatatactgagctgctggccaaagactctaaggag
tttgacgtattgcctagggagcgatggtggaagctggaggcggagcatagctctggtccc
tccctgctgggggacgagacccactggcctcacatggtggtggtggagctgggtacctac
ctggtggacctcatggtcaagcacatgaaagtgaacagcgacctcctcaactctgcctac
gaccgaaagctcatccctgtgctctaccacatgtacaccttccgcagtaacaaacaggtc
ggcttcatcaagccgcaccccatcctgacgcagatgcagcaggatgccatggacaccacg
ctgacctttgactcctacgtgatgcccatgctgtgcccgcccgtgccctggacctcggct
aaattcggcgcttacctcctcacccccaccaaaatgatgcgcgcggtggaaggcgccaac
cagcatgagatcctgctggaaaagtgccaggatgctgacctccatgccgtgctggactcc
ctcaaccagctgggcaacgcagcctggaggatcaaccagcccttgctggacatcatcatc
tccatcttcaatgacaagggtagtgagaagctggatgttccgccgcccaactctgaggct
cctaagattccccgctacaaccagcaggactcagccaccttcacctcagccgagaaggcc
cacctgaagagggaggtggttaatgccaagaagaagtgcagtgagatgcacagcctcagg
atggacgccctctataaactctccatcgccaaccacatgagggacgaggtcttctggttc
ccccacaacatggacttccgcgggcgcacctacccgtgcccgccctacttcaaccaccta
ggcagcgatgtgaccagggccgtcctggtgtttgcggaggggaagcccttagggccgggc
gggctgcaatggctgaagatccacctggtcaacctgacaggcttgaagaaacgcagctcg
ctggcaggcaggttggagtacgccaacacaatcatggaggacatcctggactctgcagac
aaccccctcatcggtaagaagtggtggcagaatgcagatgaaccctggcaaaccctggcc
tgctgtatggagatagccaacgccgtcaggtcacctgaccccacacacttcatctcccac
tttcctgtacatcaggatggctcgtgtaacggcctgcagcactatgcagccctgggtcga
gacgtgattggtgccacctctgtgaaccttattccctgtgaggtgccccaggatgtctac
agcggggtggcacagcaggtggaggagttccgtgtgcgggatgctgagaagggtctgaag
atcgcccaggtgctggagggcttcatcagcaggaaggtggtgaagcagacggtgatgacg
gtggtgtacggggtgacgcgctacggaggacgcctccagatagagaagaggctcaaggag
attgatgacttccccaaggagtatgtatgggatgcctctcactacctggtccaccaggtg
ttcagcagtctgaaggagatgttcaccggcactagagagatccaggactggctgacggag
agcgccaggctcatctctaagtcgggcagcacggtagagtgggtgacacccctgggcctt
cccatcatccagccctaccaccgcagccggacacagatgctgaaggccaccatccagtac
ctgagtttccagatcacccacgactctaaagagagaccagacactgtgaaacagaagaat
gccttccctcctaacttcatccattctctggactccacacacatgatgctgactgctctc
tactgctacagcgccggcctgacgttcgtctccgtccacgattgcttctggacccacgcc
atcacagtcgacaccatgaacaaagtttgccgggagcagtttgtggcactgcacagccag
cccatccttcaagagctgtccaacttcctactgaagaaatactgttctgggctacagagt
gaggtcaaaagcaaaaagtttctggagtaccggagaatgctgctgctgctggccaaagtg
ccccaaacaggcaactttgatctccagcgggtaaaggaatccacttacttcttcagctga
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