KEGG   Oncorhynchus nerka (sockeye salmon): 115108290
Entry
115108290         CDS       T07952                                 
Name
(RefSeq) DNA-directed RNA polymerase, mitochondrial-like isoform X1
  KO
K10908  DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:one00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:one03029]
    115108290
Enzymes [BR:one01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     115108290
Mitochondrial biogenesis [BR:one03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Mitochondrial RNA polymerase
    115108290
SSDB
Motif
Pfam: RNA_pol RPOL_N PPR_2 PPR_3
Other DBs
NCBI-GeneID: 115108290
NCBI-ProteinID: XP_029488302
LinkDB
Position
LG24:complement(42141462..42234355)
AA seq 1339 aa
MSLLRLCAFPKCLSGRILLEISVRRVPYVDHCLTIRNNIERHISEPPWTSQRRHFSALIP
KKEDGKKRVWEQSQLLDVLEARIQQLQSDVIVDVQQEKVQFVKASKSGIGASSGNSPKNV
FGERTEVPKAGQTVSKGGGQAVKGESKDASASKSRWMEKLSQEKKTKTKKLKQKLGLEDK
PVKSSKGKLMLPGTSHKTISTKAGIKTASTVKKSKSLKNQEHTMAASKHEHSMAAAPVAA
ANVPIRKAKGKGKASKEPAPELSEARNRAEEMERKAEAKARELAEVEELERKLNQWAVSA
RPELVQDNSEARVYGDVQRSVRCYLEACVFCGDIDRAHRFLLSHHRMVSRRNLLNIGLYN
IMMRVWAKKGSLNQIGRMFILIEEAGLKPNLGSYCAALECMGRNPDCSPHVINRVLRQME
EDGLPVDELFSHCVFRQDERDMVLRAIHTVQPDFQSSINTILQTCSSPLVKDFYTERADA
KYPKMAFSLEELQERFSRQLSIEQASTITIHSVEAMKPVTSHMAKMRDLLAVQRLVWHKA
LVGALREGKIILASSTQKAVRLSLYPYLCLLDEKDYVDIMIQSLSNLPPSGESLHILAKE
LGNRVHNRFCIRMKGHNQMVDKLSHIYNEYTELLAKDSKEFDVLPRERWWKLEAEHSSGP
SLLGDETHWPHMVVVELGTYLVDLMVKHMKVNSDLLNSAYDRKLIPVLYHMYTFRSNKQV
GFIKPHPILTQMQQDAMDTTLTFDSYVMPMLCPPVPWTSAKFGAYLLTPTKMMRAVEGAN
QHEILLEKCQDADLHAVLDSLNQLGNAAWRINQPLLDIIISIFNDKGSEKLDVPPPNSEA
PKIPRYNQQDSATFTSAEKAHLKREVVNAKKKCSEMHSLRMDALYKLSIANHMRDEVFWF
PHNMDFRGRTYPCPPYFNHLGSDVTRAVLVFAEGKPLGPGGLQWLKIHLVNLTGLKKRSS
LAGRLEYANTIMEDILDSADNPLIGKKWWQNADEPWQTLACCMEIANAVRSPDPTHFISH
FPVHQDGSCNGLQHYAALGRDVIGATSVNLIPCEVPQDVYSGVAQQVEEFRVRDAEKGLK
IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYVWDASHYLVHQV
FSSLKEMFTGTREIQDWLTESARLISKSGSTVEWVTPLGLPIIQPYHRSRTQMLKATIQY
LSFQITHDSKERPDTVKQKNAFPPNFIHSLDSTHMMLTALYCYSAGLTFVSVHDCFWTHA
ITVDTMNKVCREQFVALHSQPILQELSNFLLKKYCSGLQSEVKSKKFLEYRRMLLLLAKV
PQTGNFDLQRVKESTYFFS
NT seq 4020 nt   +upstreamnt  +downstreamnt
atgtcacttttgagactctgtgcctttccaaagtgtctgagtggtcgcatactgttggaa
ataagtgttcgtcgcgtgccatatgttgaccattgccttacaatccggaataacattgaa
aggcacatttcagagccaccatggacatcacaacgaagacatttctcagctctgatccca
aagaaagaagatgggaaaaaacgagtatgggaacaatctcagctgctggatgtgctcgaa
gccaggatccagcaactccaatctgacgtcattgtagatgtccaacaagaaaaggtgcaa
tttgttaaagcttccaagtcagggataggggcttcttcagggaacagtcccaagaatgtg
tttggggagaggactgaggtgcccaaggcgggacagactgttagtaagggagggggacag
gctgttaaaggagagagcaaagatgcatcagcctccaaatcccgctggatggagaaactg
agccaggagaagaagactaaaacaaagaaactgaagcagaagctaggcctagaggataaa
cctgtgaaaagcagcaaaggcaaactgatgctaccaggtacctcacataaaaccatatcg
acaaaagcaggaataaagactgcatcaactgttaaaaagagtaaaagtctgaaaaaccaa
gagcacaccatggcagcttcaaagcacgagcacagtatggcagctgcaccggttgctgct
gctaatgtgcctattagaaaagccaaagggaagggtaaagcctcgaaggagccggctcct
gagttgtcggaggccaggaacagggccgaggagatggagaggaaggctgaggccaaggcc
cgggagctggcagaggtggaggagctggagaggaagctgaaccagtgggctgtgtcggcc
agacctgagcttgtgcaggataacagcgaggccagggtgtacggcgacgtccagcgcagt
gtgcgctgctacctggaagcctgtgtgttctgtggggacatcgacagagctcaccgcttt
ctgctcagccaccaccgtatggtcagccgacgcaacctgctcaacataggactctacaac
atcatgatgagggtctgggccaagaagggctctttaaaccagattggccgtatgttcatt
ctgatagaagaagctggtctgaagcctaaccttggctcttactgtgctgctctggagtgt
atgggtcgaaaccctgactgttcgccacatgtcatcaacagggtcttgcgtcagatggag
gaggatggcctgcctgtggacgagctgttcagtcactgtgtgttcaggcaggatgagagg
gacatggtgctcagagccatccacaccgtgcaaccagacttccagtccagcatcaacact
atcctgcaaacctgctcctcaccactagtcaaagacttctacacagagagggcagatgct
aaataccccaagatggccttcagcctggaggagctgcaggagaggtttagccgtcagctg
agcatcgagcaggccagcaccatcaccattcactctgtggaggccatgaagcctgtcacc
tcacacatggccaagatgcgggaccttctggcagtgcagcggttagtgtggcacaaagcc
ctggttggggccctgagggagggcaagataatcttggccagcagcacccagaaagccgtc
agactcagcctctacccctacctctgtctgctggatgaaaaggactatgtagacatcatg
atccagagtctgtccaacctgcctcccagtggggagtctctccacatcctggccaaggag
ctaggcaaccgggttcacaacaggttctgcatccgcatgaagggacacaatcagatggtg
gacaagcttagtcatatctacaatgaatatactgagctgctggccaaagactctaaggag
tttgacgtattgcctagggagcgatggtggaagctggaggcggagcatagctctggtccc
tccctgctgggggacgagacccactggcctcacatggtggtggtggagctgggtacctac
ctggtggacctcatggtcaagcacatgaaagtgaacagcgacctcctcaactctgcctac
gaccgaaagctcatccctgtgctctaccacatgtacaccttccgcagtaacaaacaggtc
ggcttcatcaagccgcaccccatcctgacgcagatgcagcaggatgccatggacaccacg
ctgacctttgactcctacgtgatgcccatgctgtgcccgcccgtgccctggacctcggct
aaattcggcgcttacctcctcacccccaccaaaatgatgcgcgcggtggaaggcgccaac
cagcatgagatcctgctggaaaagtgccaggatgctgacctccatgccgtgctggactcc
ctcaaccagctgggcaacgcagcctggaggatcaaccagcccttgctggacatcatcatc
tccatcttcaatgacaagggtagtgagaagctggatgttccgccgcccaactctgaggct
cctaagattccccgctacaaccagcaggactcagccaccttcacctcagccgagaaggcc
cacctgaagagggaggtggttaatgccaagaagaagtgcagtgagatgcacagcctcagg
atggacgccctctataaactctccatcgccaaccacatgagggacgaggtcttctggttc
ccccacaacatggacttccgcgggcgcacctacccgtgcccgccctacttcaaccaccta
ggcagcgatgtgaccagggccgtcctggtgtttgcggaggggaagcccttagggccgggc
gggctgcaatggctgaagatccacctggtcaacctgacaggcttgaagaaacgcagctcg
ctggcaggcaggttggagtacgccaacacaatcatggaggacatcctggactctgcagac
aaccccctcatcggtaagaagtggtggcagaatgcagatgaaccctggcaaaccctggcc
tgctgtatggagatagccaacgccgtcaggtcacctgaccccacacacttcatctcccac
tttcctgtacatcaggatggctcgtgtaacggcctgcagcactatgcagccctgggtcga
gacgtgattggtgccacctctgtgaaccttattccctgtgaggtgccccaggatgtctac
agcggggtggcacagcaggtggaggagttccgtgtgcgggatgctgagaagggtctgaag
atcgcccaggtgctggagggcttcatcagcaggaaggtggtgaagcagacggtgatgacg
gtggtgtacggggtgacgcgctacggaggacgcctccagatagagaagaggctcaaggag
attgatgacttccccaaggagtatgtatgggatgcctctcactacctggtccaccaggtg
ttcagcagtctgaaggagatgttcaccggcactagagagatccaggactggctgacggag
agcgccaggctcatctctaagtcgggcagcacggtagagtgggtgacacccctgggcctt
cccatcatccagccctaccaccgcagccggacacagatgctgaaggccaccatccagtac
ctgagtttccagatcacccacgactctaaagagagaccagacactgtgaaacagaagaat
gccttccctcctaacttcatccattctctggactccacacacatgatgctgactgctctc
tactgctacagcgccggcctgacgttcgtctccgtccacgattgcttctggacccacgcc
atcacagtcgacaccatgaacaaagtttgccgggagcagtttgtggcactgcacagccag
cccatccttcaagagctgtccaacttcctactgaagaaatactgttctgggctacagagt
gaggtcaaaagcaaaaagtttctggagtaccggagaatgctgctgctgctggccaaagtg
ccccaaacaggcaactttgatctccagcgggtaaaggaatccacttacttcttcagctga

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