Oncorhynchus nerka (sockeye salmon): 115108370
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Entry
115108370 CDS
T07952
Name
(RefSeq) neurogenic locus notch homolog protein 2-like
KO
K20994
Notch 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
115108370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
EGF_2
Ank_2
Ank
Notch
NOD
NODP
Ank_5
Ank_3
EGF_3
Ank_4
EGF_Teneurin
EGF_DL_JAG
JAG1-like_EGF2
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
115108370
NCBI-ProteinID:
XP_029488470
LinkDB
All DBs
Position
LG24:44978622..45034222
Genome browser
AA seq
2488 aa
AA seq
DB search
MGQLPGFASDKVLVFVVCCIRLSLALQCLDAVKPCVNNATCATFTNGTGYCRCAAGFLGE
YCHHKDPCHPGYCLNGGNCSVAVSGIPGSPTCSCPLGYTGQHCQTPQNSTCYPNNPCANR
GVCTLLSLDKYKCQCAHGWTGIRCEHVDTCLPVPCANGGTCSSLSGSKFSCTCPPGYWGP
RCLNDTDECAASAPVCQNQGACVNTPGSYRCNCAPGFTGRHCETPYIPCAPSPCLNGGTC
RQTTETSYWCHCLPGFNGTNCDNNIDDCPDHHCRNGGTCMDGVNTYNCKCPPEWTGQSCT
EDVDECRLQPNTCQNGGTCSNIQGSYTCVCVNGWSGLDCSENIDDCATAACTKGSTCIDR
VASFLCVCPYGKTGLLCHVNDACISSPCRDGAQCDTNPINGMFNCNCAPGYKGSTCNDDI
NECIIGPNPCEHGGVCVNTDGSFTCNCARGYGGPRCETDINECVSSPCQNDGTCLDRIGD
YSCICMEGFEGTHCEIDINECASSPCLNQGICLDQVKRYVCQCPLGFSGEMCQIDIDECS
STPCLNGAKCIDRPNGYECECAEGFYGPLCKENIDDCDPEPCHHGVCRDGIATFSCDCDP
GYTGSICNIQVMECHSLPCQNRGRCIDLVNKYQCNCLPGTSGVNCEINVDDCASNPCEYG
ECQDGINEYKCVCAPGYTGAKCDVDINECNSSPCMSGGTCVDKVNGFICQCPPGTHGPLC
HSGTDHCAPRPCVHGDCVEQQSGYHCECESGWVGQHCDQEKDECQSSPCQHSGSCVDRLN
GYSCQCRPGFTGVNCEVNIEECASSPCENHGTCVDGVNSYTCLCAAPYSGKHCEEELVPC
ASHPCERGGVCQPTPDYTFYTCRCPSGWQGPRCTEDVDECRKNPCQNSARCINSQGSYVC
KCQPGYSGLNCQTNIDDCSPNPCLNGGSCVDGVGGFSCDCRPGFDGERCEAEMDECASQP
CRNGAVCRDYVNSFVCECRPGFDGILCEHNIPECTESSCLNNGTCVDDINTFSCRCRPGF
YGTFCQYEQNECDSQPCKNGGTCTDGLGSYRCTCPVGYNGQNCQNFVNLCSQPLCRNGGS
CSQSQTTWSCHCPVGWTGLYCDVPNMSCQDYAARNGIPVEMVCKHMGRCVNVGNAHQCQC
QPGYTGSYCDKTVDECQSNPCRNGATCMDYQGTYECMCKAGYQGVNCEYDVDECHSNPCR
HGGTCINLINRFSCACPPGTHGVQCEVNMDDCAPKPGSWGPRCLNGGQCMDGVGRYTCSC
PPGFAGEHCEGDVNECLSGPCHSPGSLDCVQLANDYQCRCRLGYTGRLCESMVDLCQSKP
CHNSGTCSMNMSSVHGYSCTCQPSFTGFNCGEVEGYNCAQLRCQNGGHCQDSQGGHLHCR
CQPGFSGSRCETVHSCQNRPCLNGGTCMKDPHNPYQYSCRCPAHFSGRHCENVIFDQSPR
TPSCPYVECEQRSGDKMCDPQCNNHECQWDGGDCSLHWRRPWVNCTASVPCWELFRNGRC
DHECDNSGCLFDSFECQESTKSYCKYDDYCADHYANKICDKSCNTEACGWDGLDCSEDTP
AKVVDGTLVIVVLLQPEELLGDVRGFLRSLGTLLHTNLRVKMDAQQKLMVYPYYGLEHDN
AIEGQSATMKRRGKRELDKEVIGSKVYLEIDNRECAESSMDCFSSTELAASFIAAEYLKS
ALPYPVVSVDSDHMDPQKPPFMLYLAVGAAVIILLILVLGVLAAKRKRKHGILWLPDGFL
AKKDDKRREPLGQDDFGMKNFKTQDGGMMDGGQRWMEEEAPPKKPRTEDKPLLPLGVDGG
VDRREWTLQHHKAADISLTPPQADLEADCLDVNVKGPDGFTPLMLASLRNGGASDCGLQA
EEEEESGGDEPGPNVISDLITQGATLIAQTDRTGETALHLAARYARADAAKRLLDAGADA
NAHDNMGRTPLHAAVAADAQGVFQILIRNRATELDARMNDGTTPLILAARLAVEGMVEEL
VHCHADINAVDDHGKSALHWAAAVNNVEATLVLLKNGANRDMQDNKEETPLFLAAREGSF
EAAQVLLDHYSNRDITDHLDRLPRDTAQERMHHDIVRLLDQYNLVHSPHNGPNHMGGGVG
HSLVCGGNGAGYMGMRPGPQGKKSRRGGVKVGGPGGGTAKELKDMKAKRRKKPTGGEGPA
VGAVGGASGNGTKAAGGLSESSVTMSPVDSLESPHSYTGDAAVASNTANSPPLLSSPSSR
PLLPPVSHMLGQQQSWLGLKHGYGGHMFSLLPQQMGNGHSGISQHHGQGLLTPMNVTMSR
EQLPPIVTFQMMAPGGGQSLLKQPQPGQVQSQGQNQGQPRSQQGPTHLHCTQGMMYQMPG
VGLQHSLSHSLPHSHGLAHSHGMVHDGQSRQQLPPYQAIQSPVDKYPTPPSQHSYATAGS
EGTTPGHPAHPPSEHPYLTPSPESPDPWSSSSPHSNSDWSDVTTSPTPLGNPHALPPPRH
THIPEQPQSQQTQQNPQQPQHGNMQVFV
NT seq
7467 nt
NT seq
+upstream
nt +downstream
nt
atgggccaattacccggttttgcttcggacaaagtattagtcttcgtcgtctgctgcatt
cggctttctttggctcttcagtgtctggatgctgttaagccgtgtgtgaacaatgctacg
tgtgccaccttcacaaacgggacagggtactgcaggtgtgccgcaggcttcctgggtgag
tactgccatcacaaagacccgtgtcatcctggttactgtctgaatggagggaactgctca
gtggctgtgtcgggcatcccgggcagccccacctgctcctgtcccctgggctacaccggg
cagcactgtcagaccccccagaactccacctgctatcccaacaacccttgtgccaacaga
ggagtctgcaccttgctctccctcgacaagtacaagtgccagtgtgctcacggatggaca
ggcatacgatgtgagcatgtggacacctgtctaccagtaccctgtgctaacggaggcacc
tgcagctctctgtccgggagcaagttcagctgtacctgtcctccaggctactggggtcct
cgctgcctcaacgacactgacgagtgtgctgcctccgccccggtgtgtcagaaccaaggg
gcgtgtgtcaacacccccggctcctacaggtgtaactgcgcccccgggttcaccggccgc
cactgtgagaccccctacatcccctgcgccccctcgccctgcctcaatgggggcacgtgt
cgccagactactgagaccagctactggtgccactgcctgccaggtttcaatgggactaac
tgtgacaacaacattgacgactgccccgaccatcactgccgaaatggaggaacctgcatg
gatggcgtcaatacctacaattgcaaatgtcccccggaatggactggtcagtcctgtaca
gaggatgtggatgagtgtcgcctgcagcccaacacgtgtcagaacggagggacctgcagc
aacatccagggcagctacacctgtgtgtgtgtcaacggctggagtggcctggactgctct
gagaacatagatgactgtgctacggctgcctgcaccaagggctccacctgtatcgaccgt
gtggcatccttcctctgtgtctgcccctacggaaagacaggtttgctgtgccacgtgaac
gatgcctgcatcagtagcccgtgcagggacggggcacagtgcgacaccaaccccatcaac
ggcatgttcaactgcaactgtgccccaggctacaagggaagcacctgcaatgacgacatc
aacgagtgcatcattggtccaaacccctgtgagcatggaggagtatgtgtgaacacggat
ggctcgttcacatgtaactgtgcaagaggttatggtgggccgcgctgtgagacagacatc
aatgagtgtgtctccagcccctgccagaacgacggcacctgtctggaccgcataggagac
tacagctgcatctgtatggaaggatttgagggaacacactgtgagattgacatcaacgag
tgtgccagctctccatgtctgaaccaagggatctgtctggatcaagtcaaacgctacgtc
tgccagtgccctctagggttcagtggggagatgtgtcagatcgacattgacgagtgttcc
agcacgccctgcctcaacggggccaagtgtatcgaccgacccaacggatacgagtgtgaa
tgtgctgaaggcttctatgggccactgtgtaaagagaacatagatgactgtgacccggag
ccctgccaccatggtgtgtgtcgtgatggcatcgccaccttctcctgtgactgcgacccg
ggctacaccggctccatatgtaacatccaggtcatggagtgccacagcctcccctgccag
aaccgcggacgctgcatcgacctggtcaacaagtaccagtgcaactgtctgcctggcacc
tcaggggtgaactgtgagattaatgttgatgactgcgccagtaacccctgtgagtatgga
gagtgccaggatgggatcaacgagtacaagtgtgtctgtgctccagggtacacaggtgca
aaatgtgacgtggacatcaatgagtgtaattctagcccgtgtatgagtgggggcacatgt
gtagacaaggtgaacggcttcatctgccagtgcccccctggcacccacggccccctgtgc
cactctggcactgaccactgtgccccccggccctgtgtacacggagactgtgtagagcag
cagagcgggtaccattgtgagtgtgagtctggctgggtggggcagcactgtgaccaggag
aaggatgagtgccagtccagcccctgccagcacagtggcagctgtgtggacagactcaat
ggatactcctgccagtgtcgccccggattcacaggtgtgaattgtgaggtcaacatagag
gagtgcgcatcaagcccgtgtgagaaccatggtacctgtgtggacggagtcaacagctac
acctgcctgtgtgccgccccgtactcaggaaaacactgcgaggaggagttggttccctgt
gcgtctcatccatgtgagcggggaggtgtgtgtcagccaaccccagactacaccttttac
acctgtagatgtcccagcggctggcaaggccctcgttgcactgaggatgtggatgagtgc
aggaagaacccgtgtcagaacagcgcccgttgcatcaacagccagggcagctacgtgtgc
aagtgtcagccaggctacagcggtctcaactgccaaaccaacatcgatgactgctccccc
aacccgtgtctgaacggcggttcctgtgtggatggagtgggagggttctcctgtgactgc
cggccagggtttgatggggagcgctgtgaggcagagatggatgagtgtgccagtcagccg
tgccggaacggagccgtgtgccgggactacgtcaacagcttcgtctgcgagtgccggcca
ggtttcgacggaatcctatgtgaacacaacatcccagaatgcactgagagttcctgtctg
aataacgggacctgtgttgacgacatcaacaccttctcgtgtcgttgtcgtcctggtttc
tacgggaccttctgtcagtatgagcagaatgagtgtgactctcagccctgtaagaacgga
gggacctgtacagacggcctaggatcctaccgttgcacctgccctgtgggctacaacggg
cagaactgccagaactttgtgaacttgtgtagccagccactgtgcaggaacggagggtcc
tgttcccagtcacagaccacctggtcatgtcactgtcctgtgggctggactggtctgtac
tgtgatgtccccaacatgtcctgtcaggactatgctgctcggaatggtattccagtggag
atggtgtgtaagcacatgggtcgctgtgtgaacgtcggtaatgcccaccagtgtcagtgc
cagcctggctacacaggcagctactgtgacaagactgtggacgagtgccagtcaaatccc
tgccgcaacggagccacctgcatggactaccagggcacatatgagtgtatgtgcaaggct
ggctaccagggggtgaactgtgagtatgacgtagatgagtgtcactctaacccttgtcgt
catggaggaacctgcatcaacctcatcaaccgcttctcctgcgcctgcccacctggtaca
catggtgttcagtgtgaggtgaacatggacgactgtgctcccaagcctggctcctggggg
cctcgctgtctgaacgggggccagtgtatggatggggtgggccgctacacctgctcctgc
ccccctggcttcgctggggaacactgtgagggggacgtcaacgagtgtctctctggaccc
tgtcactctcctggtagcctggactgtgtgcagctggccaacgactaccagtgccgctgt
cgcctgggctacaccggacgcctctgtgagtccatggtggatctgtgccagtctaagccg
tgccataacagtggcacctgttccatgaacatgagctcagtgcatggatactcatgcacc
tgtcaaccaagtttcactggcttcaactgtggagaggtagagggctacaactgtgcccag
ctgcgttgtcagaacggcgggcactgccaggattctcagggtggtcatctgcactgccgt
tgccagccaggcttcagtgggtcgcgctgcgagaccgtgcacagctgccagaaccgaccc
tgtttgaatggaggcacctgtatgaaggacccacacaacccataccagtacagctgtcgc
tgcccagcccacttctcaggcaggcactgtgagaatgtcatcttcgaccagtccccccgc
accccctcctgcccttatgtagagtgtgagcagcggtccggggataagatgtgtgacccg
cagtgcaacaaccatgagtgccagtgggacggaggggactgttctctacattggcgccgg
ccatgggtcaactgcaccgcctccgtgccctgctgggagctgttccgcaacggccgctgt
gaccacgagtgtgacaactctggctgcctcttcgacagctttgagtgtcaagagagcact
aagtcctactgcaagtatgatgactactgtgcggatcactatgccaacaagatctgtgac
aagagctgtaacacagaggcatgtggctgggatggcctggactgctctgaggacacccct
gctaaggtggttgatggcactctggtgatcgtagtgttactgcagcctgaggagctgctg
ggagacgtgagaggcttcctgcgctccctgggaaccctgctgcacaccaacctccgtgtt
aagatggacgcccagcagaaactcatggtgtatccttactatggcctggagcacgacaac
gccattgaaggacagtctgctacaatgaaacgtagaggcaaacgggagctggacaaggag
gttatcgggtctaaggtttacctggagatcgataaccgagagtgtgctgagagctccatg
gactgtttctccagcacagagctggctgcatccttcatcgctgcagagtacctgaagtct
gcgctgccctaccctgtggtctctgtcgacagtgaccatatggacccccagaagcccccc
ttcatgctgtacctggctgtgggagcagctgtcatcatcctgcttatcctggtgctgggt
gtgctggccgccaagaggaaacgcaaacacggcatcctctggctccccgatggcttcctg
gccaagaaagacgacaagaggagagagcccctgggccaggacgacttcggcatgaagaac
ttcaagacccaggatggagggatgatggacggaggccagagatggatggaagaggaggct
ccgcccaagaaaccaaggactgaggacaagcccctgctgccactgggtgtggatggagga
gtggaccgacgggagtggactttacagcaccacaaggctgctgacatctctctcactcca
ccacaggctgatctggaagcagactgccttgatgtcaatgtcaaaggaccagatggcttt
acccccctgatgctggcttctctacgaaacggaggggcgtctgattgcggcctgcaggca
gaggaggaagaggagagtgggggagatgagccgggccccaacgtcatctcagacctcatc
acccagggtgcaacactcatagcccagacagatcgcaccggggagacggcactccacctg
gctgctcgctatgcccgggccgatgccgccaaaaggctgctggatgccggggcagatgcc
aatgctcacgacaacatgggtcgcacacctctccacgctgctgtggcagccgatgcccag
ggagtgttccagatcctgatccgtaaccgggccaccgagttggatgccaggatgaacgat
ggcaccacacctctgatcctggctgccaggctggctgtggagggcatggtggaggaactg
gtccactgccacgcggacatcaatgctgtcgacgaccacggtaagtctgctctgcactgg
gcagctgctgtgaacaatgtggaggccaccctagtgctgctgaagaatggagccaacaga
gacatgcaggacaacaaggaggagaccccattgttcctggcagccagggagggtagtttt
gaggcggcccaggttctgctggaccactactctaatagggacatcacagaccacctggac
cggctgccccgtgacaccgcgcaggagcgcatgcaccatgacattgttcgtctgctcgat
cagtacaacctggtccacagccctcacaacggccccaaccacatgggcgggggagtggga
cactccctggtctgtgggggcaacggagcgggctacatgggcatgcggcccgggccccag
ggcaagaagagcaggcggggcggggtgaaggttggaggtcctggcggaggtacagccaaa
gagctgaaagacatgaaggctaagcggaggaagaagccaacaggaggagaagggcctgca
gtgggagctgttggaggagccagtggcaacggcactaaagctgcaggagggctgtcagag
agctcagtcaccatgtctcctgtggactccctggagtctccacactcgtacacaggagat
gctgccgtggcatccaacacggccaactctcctcctctcctgagcagcccctcctctagg
cccctgctgcctcccgtcagccacatgctgggccaacagcagagctggctgggtttgaag
catggatacggcggccacatgttcagcctccttccccagcagatgggtaacggccattct
ggtatttcccagcaccacggccaaggcctgctcacccccatgaatgtcaccatgagccga
gagcagctgcctcccatcgttaccttccagatgatggcaccggggggcgggcagtccctg
ctgaagcagccccagcctgggcaggtgcagtcacaggggcaaaaccaaggccagccccgc
tctcagcagggccctactcacctgcactgcacccagggcatgatgtaccagatgcccggc
gtgggcctccagcacagcctgtcccacagccttccccactctcacggcctggcccacagc
cacggcatggtgcatgacggccagtcccgccagcagctccctccatatcaggctatccag
agccccgtggataagtaccccacccctccctctcagcacagctacgccaccgctggctcg
gagggcaccaccccagggcacccggctcacccgcccagtgagcacccgtacctcaccccc
tcccccgagtcccctgacccctggtcctcttcctccccccactccaactcagactggtct
gacgtcaccaccagccccacccccctggggaacccccatgcactgccgcctccccgccac
acacatattccggagcagccacagtcccagcagacgcaacagaacccccagcagcctcag
catggcaacatgcaggtgtttgtatag
DBGET
integrated database retrieval system
