Oncorhynchus nerka (sockeye salmon): 115108409
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Entry
115108409 CDS
T07952
Symbol
fxr1
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1
KO
K15516
fragile X mental retardation protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115108409 (fxr1)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115108409 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
115108409 (fxr1)
mRNA cycle factors
Stress granule specific factors
115108409 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
FXR_C1
Tudor_FRX1
KH_1
Agenet
FXR_C3
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
115108409
NCBI-ProteinID:
XP_029488549
LinkDB
All DBs
Position
LG24:46672308..46690939
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AA seq
677 aa
AA seq
DB search
MHCMPNMDELTVEVRGSNGAYYKGFVKDVHDDSLAIAFENNWQPERQVPFSDVRMPPPAD
GKKDIGEGEEVEIFSRANEQEPCGWWLAKVRMMKGDFYVIEYAACDATYNEIVTFERLRP
VNINKAVSKSSFFKCTVPVPDDLKAVCESEQAHKDFKKAVGACRIVYCSETSSLVVLSIN
EATVKRVSLLSDMHLRSIRTKLMLMSRNEEATKHLESTKQLASGFQEEFTVRVDLMGLAI
GSHGSNIQQARKLPGVTAIELDEGSGTFRIYGENEEAVKKARNYLEFLEDSVQIPRNLVG
KVIGKNGKVIQEIVDKSGVVRVRIEGDKDGTQPRQETQGMVPFTFVGTKENIGNVRVLLE
YHIAYLNEVEQLRMERLQIDEQLRQIGMGHRPSSGRPADKGYTTDDSVAATAVHTSRSYT
GRGRGRRGPNYTSGYGTNSEQSNASETDSERKDELSDWSLAGEEPERGTRQQRDSRRRAG
PGRGRGPRGRGAGRGAPNTALKDPYGNPYSVLDNTETDQTADTDASDSNLNTNRRRRSRR
RRTDEDTTVIDGMSESDNASLSENSLDDSKAKPQRRNRSSRRSVRPPEEKQPVTVADYIS
RAESQSRQTNQKELKNNKKELGQVECIAEHSLSAEANTSNGSSNGRGDEPGRASTEQVAK
VTYQGNGDQQPVLNGVS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgcattgcatgcccaacatggatgaactgacggtggaggtccgtggctccaacggagca
tattataagggatttgtcaaagatgtccatgacgattcactcgctattgcctttgagaac
aattggcaaccagagagacaagttccctttagtgatgttcggatgccacctccagccgat
ggtaaaaaggacatcggggagggagaagaggtggagatcttctcccgggccaatgagcag
gagccatgtggctggtggcttgccaaagtgcgcatgatgaagggagatttctatgtgatc
gagtatgctgcctgtgacgccacatacaatgaaatagtcacatttgaacgtcttcggcct
gtaaatatcaacaaggcggtgtcaaagagctccttcttcaagtgcacagtcccagttccc
gacgacctgaaagcagtgtgcgaaagtgaacaagcgcataaagatttcaaaaaggcagtg
ggagcttgtcggattgtctactgttcagaaacaagtagcttggttgtactgtccataaat
gaagccacagttaagcgagtgtctttgctcagtgacatgcacctgaggagcattcgtact
aagctcatgctcatgtcccgaaatgaggaggccactaaacatctggagagtacaaagcaa
ctggcatctggtttccaagaggagtttacagtcagggtggacctcatgggccttgccatt
ggaagccatggaagcaacattcaacaagccagaaaactgcctggagtcactgctatcgag
ctggatgaggggagcgggacgttcagaatttacggagagaatgaggaggccgttaagaag
gcaaggaattatctggagtttcttgaagattctgttcagatccccaggaacttggtcgga
aaggtaattggcaagaatgggaaagtcattcaggagatcgttgacaagtctggagtggtg
agagttaggattgaaggggacaaggatggcacacagccacgtcaagaaacacagggaatg
gtcccgtttacatttgtcggcactaaggagaatattgggaatgtccgggtacttctggag
taccacattgcctacctgaacgaagtggagcagctgcgtatggagagactgcagattgac
gagcagctgaggcagattgggatgggccacaggccttcatctggccgcccagcagacaag
ggctacaccacagacgacagtgtggctgctaccgccgtgcacaccagccgctcctacacc
ggcagaggccgcggacgcaggggccccaactacacctctggctatggcacaaactctgag
caatccaatgcctctgagactgactctgagcgtaaggatgagctgagtgactggtccctg
gcgggagaagaaccggagagggggactcgacaacagagagacagcaggaggagagctggt
ccagggaggggtagagggcccaggggccgtggagcagggagaggagcccccaacaccgct
ctgaaggatccttatggcaacccatacagtgtgcttgacaacacagagacagaccagacg
gctgacactgatgcaagcgactccaacctcaacacaaaccgccgccgccgctcccgccgc
cgccggactgatgaggacacaacagtcattgatggcatgagtgaatcagataacgcttcc
ctcagtgagaatagccttgatgactcaaaagctaaaccacaacggcgtaaccgtagcagc
agacgcagtgtccgcccaccagaggaaaagcaaccagttacagtggcagattacatatcc
cgtgctgaatcacaaagcagacagactaaccaaaaagaactgaaaaataacaaaaaagaa
ctggggcaggttgagtgtatcgcggagcacagcctatctgcagaagcaaatacaagcaac
ggatccagcaatggaagaggtgacgaaccaggcagggcttccacagaacaggttgccaaa
gtcacttaccaagggaatggtgaccagcagcctgtcctgaacggggtttcctaa
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