Oncorhynchus nerka (sockeye salmon): 115108499
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Entry
115108499 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 24-like
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115108499
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115108499
Enzymes [BR:
one01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
115108499
Peptidases and inhibitors [BR:
one01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
115108499
Ubiquitin system [BR:
one04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
115108499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
UCH
UCH_1
UCH_UBL1
DUF3517
UBA
UBA_7
ubiquitin
Motif
Other DBs
NCBI-GeneID:
115108499
NCBI-ProteinID:
XP_029488760
LinkDB
All DBs
Position
LG24:51886795..51929323
Genome browser
AA seq
2617 aa
AA seq
DB search
METEEEQHMTTLLCMGFPDPVAIRKALRLAKNDINEAVALLTNESPGLGYGYEPMESGPA
PGPCGDGETTGRTGTGGFDPPPAYHDVVESERNNDENGNCSGGSMEFPTTNLYELESRVF
TDHWSIPYKREESLGKCLVAATCLAKHGLADADENCKRFMDRCMHEAFKKLLTSSAVHKW
GTEIHEGIYNMLMLLVELVAERVKQEPIPVGLMGVLAMAFNPDNEYHFKNRMKACQRNWS
EVFGEEAMFAVSPSNNYQKEPHGWLVDLVNLFGEMGGFTAIQAKLNTEEIEIGCVSALVQ
PLAVCAEYLNSSLVQPMLDPVIHKMITYVQNLEEKDLKDKRLVSIPELLSAIKLLCMRFQ
TALVTVVDDLRLDTLLRMLKTPHFSTKMNSLKEVTKLIEESTVSKTVKNAIDTDRLLDWL
VENSVLSIALEGNIDQAQYCDRIKGIIELLGSKLSLDELSKIWMIQAGQSSTVIENIHTI
MAAAAVKFNFEQLSHLFVLIQKSWEVESDRVRQKLLSLIGRIGREARSEATTGKVLEVLW
ELAHLPTLPTSLVQQASEEHLAILTDAYAVKETVKRCYIIKCIEDIKKTQTEEEGKTSDI
QTSFLTGSWGKKKAKENSLAKSSQQGSPQAVWVVPALRQLHEITRSFIKQTYQKQDKSII
QDLKKNFEIVKLITGSLVVCHRLAVSAAGNNGLTGHTLVDGRYTYQEYLDGHLRFLAFFL
QEASLYLVWNRAKELWDCLVSGPEVCELDREMCFEWFTKGQHDLESDVQQQLFKEKILKL
EPYEITMNGFNLFKTFFENVNLCDHRLKRQGTQLCVERLDLAGMDFIWRIAMETPDEEIA
NEAIQLIITYSYTNLNPKMKKDSVSLHKKFIADCYKRLEAASSALGGPTLTHAVTRATKM
LTATTMPTVATSVQSPSRSTKLVIIERLLLLAERYVITIEDLYSVPRTXLPHGASFNGHP
VSLHVTYESTKDTFTLEAHSNETIGSIRWKIAEHLNCPVDNVQIFANDSVLTMNRDQKLL
SQLGFSDEQSLTVKSSGTGTPSGGSSESSVSASSSSSAVFNSAYAMEQEKSLPGVVMALV
CNVFEMLYQLANLDEPRITLRVRKLLLLIPTDPEVQDALDNFVPKESSVWSHQKTLFTLG
QGSGSRSPSLGSKQQHQPSAASILESLFRSSAPGMSTFRVLYNLEVLSSKLMPTSDDEMA
KTSVKSFCENFLKAGGLSLVVNVMQRDSIPSEVDYETRQGVYSICLQLARFLLVGQSMPS
LLDDDVIREGDTLSSRPFRNAGRPGRQLSLCGTPEKSSYRQMSLSERSSIRVEEIIPAAR
VAIQTMEVGDFTSTVACFMRLTWAAAAGRLDLVGSPQPIRPEHSSLLPLVVRSRVSSTGS
NCSSSSEGEAPPTALHAGICVKQQSVSIKDCIIAREALSLLVTCLQLRTQQLGSFYNLPC
VSDFIIDILLGSASGEIRRVACDQLYTLSQSDTSAFPEIIKPNVFLLRVVLTSQLPLWSP
TSVMRGVNQRLLSQCTEYFELRCQLLDDLTSSEMEVLSVSAAAMLEDEISWLDNFEPSWS
SEMETSEADNILQAGHLRLIKTLLSLCGTEKEHLGPSLIQQLLDDFLFRASRIILNTSDP
ASSSPPSHDFHPKCSTASSRLAAYEVLVMLADSSVANLQLITRELLSMHHQSDPSLSKEF
DFLPPVDSRSVSGFVGLKNGGATCYMNAVFQQLYMQPGLAEAFLSIEDDTEQPDESVFCQ
VQSLFGHLMESKLQYYVPENFWKIFKMWNKELYVREQQDAYEFFTSLVDQLDEHLKKIGR
EQIFKNTFQGIFSDQKICKDCPHRYEREETFMALNLGVTSCQSLEISLDQFVRGEVLEGT
NAYYCEKCKEKRTTVKRTCIKSLPSVLCIHLMRFGFDWESGRSIKYDEQIRFPWVLNMEP
YTVSGMARQDGGAEGGDCRGEAGGSPRKKVTISENYELVGVVVHSGQAHAGHYYSFIKDR
RSARGRWYKFNDNVVEEFDMNDETLEYECFGGEYRPKVYDQSNPYPDVRRRYWNAYMLFY
QRISDQNSPVLPKKSRVSAMRQEAEDLTLSAPSSPDVSPQSSPRPPRANNDRLSVLTRLV
RKGEKKGLFVEKMPARIYQMVRDENLKFMKNRDVYNSDYFNFTLSLASVNATKLKHPAYQ
AMARESLQLAVHFLFHTYLHTKKKLRVDTEEWMATVEVLLSKSSEACHWMAQYLVGPEGR
EITKVCLLECGVREVRVVVAAILEKTLESALHFADSGLDSLTDALLSLLDKDVPENVKHC
NQYFSLFSNFAQRGSGPCQLLLKHSAYRRMLIFLLGPNRQNNQNRRWSPAQAREFLHLHS
TLALMTLHSDLNTQHTHDQGVCKLNVSSVPASSTLLQLDADIMASLFTHEGQPYLLEVMF
AVRELSGPLTVLIEMVTYCSFCNEPFSLGVLQLLKTQLETAPPHELKNVFQLLQELLVVE
DPLQTQRLKYAFESEKGLLALMHQSNNVDSSRCYQCVKFLVTLAQKCVPAKDYFKDLSGH
WSWAVQWLQKKMSEHYWTPQSNVSNETSTAKTFQRTISAQDTLAYATALLNEKEPSGSSN
GSDGSPANENADRSLRQGSESPMMLGDSKSDLEDVDP
NT seq
7854 nt
NT seq
+upstream
nt +downstream
nt
atggagacagaagaggagcaacacatgacgaccctcctctgcatgggtttcccagatcct
gtggctatacgcaaggcgctacgcctggcgaaaaacgacatcaacgaggctgtggcgctc
ctgaccaacgaaagccccgggcttgggtatggatatgagccgatggagagtggccctgcc
ccgggcccatgcggagacggggagaccaccgggcggactgggactggagggttcgaccca
ccccccgcttaccacgatgtggtggagagcgagaggaataatgatgagaatgggaactgt
tctgggggcagtatggagttccccaccactaacctgtatgaactggagagcagagtgttc
actgaccactggtccatcccctacaagagagaggagtcactgggcaaatgtctggtcgca
gccacctgcttagccaaacacggtctggcagatgcagatgagaactgtaagcggtttatg
gaccggtgtatgcacgaggcctttaagaagctcctgaccagtagtgctgtccataagtgg
gggacagagatccatgaggggatctataacatgttgatgttactggtggaactggtggct
gagagggtcaaacaggaacccatacccgttgggctaatgggagtactggctatggccttt
aacccagacaatgagtaccactttaagaaccgtatgaaggcgtgtcagaggaactggagc
gaggtgtttggagaggaagccatgttcgctgtttcgcctagcaacaactaccagaaggag
cctcatggctggctggtagacttggtcaatctgtttggagagatgggagggttcactgct
atccaggctaaactcaatacagaggagatagagattgggtgtgtgtctgctctggtccag
cctctagctgtgtgtgcagaatacctcaactccagccttgtgcagcccatgttggatcct
gttatccataagatgatcacctacgttcagaacctggaggagaaagatctcaaagacaag
aggctggtgagcatcccagagctgctgtcggccatcaagctgctgtgtatgaggttccag
actgccctggtaactgttgtggacgacctacgcctggacactctgctacgcatgttgaag
actcctcacttttccaccaaaatgaactccctcaaagaggtaactaagctgatcgaggag
agtactgtgtctaagacagtgaagaatgccattgacacagacagactgctggactggctg
gtggaaaactctgtcctctcaatagcactggagggtaacatagaccaggcccagtattgt
gatcgaataaaaggcatcattgagttgctgggcagtaaactgtctctggacgagctctcc
aagatctggatgatacaggcaggacagtcgtccacggtgattgagaacatccacaccatc
atggctgctgctgccgtcaagtttaacttcgagcagctcagccacctgtttgtccttata
cagaagagctgggaggtagagagtgaccgtgtgaggcagaagctgctcagtctgattggg
aggatcggtagagaggcccgctctgaggccaccacagggaaggtgctggaggtgctgtgg
gagttagcccacctgccaaccctgcccacctccctggtacagcaggcgtctgaggaacac
ctggccatcctcactgacgcgtacgctgtgaaggagactgtcaaacgctgctacatcatc
aaatgtatagaggacatcaagaagactcagactgaggaggagggtaaaaccagcgacatt
cagacctcatttcttactggctcctggggcaagaagaaagccaaagaaaactcattggcc
aaatcttctcaacagggcagtccccaggcggtctgggtggttccagctctgcggcagctc
catgagatcacacgctccttcatcaaacagacctaccagaaacaggacaagagcatcatc
caggacttgaagaagaactttgagatcgtcaaactgattacaggatctctggtggtctgc
catcgactagcagtgtctgcagctgggaacaacggactcaccggacacacactagtggac
ggacgatacacctaccaggagtatctagatggccacctgaggttcctggccttcttcctc
caggaggccagcctctacctggtctggaacagagccaaagaactatgggactgcctggtc
tctggacccgaagtctgcgagctggacagagagatgtgttttgagtggttcactaagggc
cagcatgatctggagagtgatgttcagcagcagctcttcaaagagaagatcctcaaactg
gagccctacgagattactatgaatggctttaatctgtttaagaccttctttgagaatgtc
aacttgtgtgaccatcgcttgaaacgccaggggactcaactgtgtgtggagcggctagac
ctggctgggatggactttatctggcgtatcgccatggaaacgcctgatgaagagatcgct
aacgaggccatacagctaatcatcacatacagctacaccaacctcaaccccaaaatgaag
aaggattctgtgtctttacacaagaagttcattgctgattgttacaaacgactggaggca
gccagttcagctctaggagggcccacgttgactcatgctgttaccagggcaaccaagatg
ctgaccgccaccaccatgccgactgtagccacgtctgtccaatcaccttccaggtccacc
aagctggtgatcattgagaggctgctgctattggctgagcgttatgtcatcactatcgag
gacctgtattctgtgcctcgtacanttctacctcacggagcgtcgttcaacggccaccct
gtctctctacatgtcacctatgagtccaccaaagacaccttcaccttggaggcccacagt
aacgagactataggcagcatccgctggaagattgctgagcatctcaactgtccagtcgac
aacgttcagatctttgccaacgacagcgtgttgactatgaaccgggaccagaagctgctg
tcccagctggggttcagtgatgagcagtctctgacagtgaagagctctggcacagggaca
ccctctggtggcagctcagagtcctccgtctccgcttcctcctccagctccgctgtcttc
aactcagcttatgctatggaacaggagaagtcccttccaggtgttgtcatggcattggtg
tgtaatgtgtttgagatgctctaccagctggccaacctggacgaaccacggataactctg
cgtgtacgtaagctgctgctgctgatcccaacagacccagaggttcaggacgctctagat
aactttgttcccaaagagtccagtgtctggagtcaccagaagacattgttcaccctgggt
caggggtcaggctctcggtctccgtctctgggttctaagcaacagcaccagcccagtgct
gcctccatcttggaatcactcttcagatcctctgcacccgggatgtccaccttcagagtc
ctctacaaccttgaggtgttgagttctaagttgatgccgacctcagatgatgagatggct
aagaccagtgtcaagtctttctgtgagaacttcctgaaagctggaggtctcagtttggtg
gtgaacgtgatgcagcgggactctattccctccgaggtggactatgagaccagacaggga
gtctactccatctgtctacaactggccaggttcttattggttggccaaagtatgccgtcg
ttgctggatgatgatgtcatccgagagggtgacactctatctagtcggccattccgtaac
gcagggcgaccagggagacagctgtcgctgtgtggaacgcctgagaagagctcctataga
cagatgtctctgtctgaacgctcctccatcagagtagaggagatcatccctgctgcacgc
gtagctatacagacgatggaggtgggggacttcacctcgacggtggcgtgtttcatgcgt
ctaacctgggcggcagccgccggccgattggatctcgtcggcagtcctcagccaatcaga
cctgaacacagctcactcctccccctcgtggtccgcagccgtgtcagcagcactggaagt
aactgcagctccagcagtgagggcgaggcgccgcccacagcgttgcatgctgggatatgt
gtgaagcagcagagtgtttctattaaagactgcatcattgctagagaggccctgtctcta
ctggtcacctgcctacagctacggacacagcagctagggtcattctacaacctcccctgt
gtcagcgacttcatcatcgacatcctgctgggatcagccagtggagagatccggcgcgtg
gcgtgtgaccagctgtacactctgagccaatcagacacgtctgcgttccctgagatcatc
aagcccaacgtgttcttgctgcgagtcgtcctcacctctcagctgcccctctggagcccc
acgtctgtcatgaggggagtcaaccagaggttgctgtctcagtgtactgaatactttgaa
ctgcgatgtcaactactggatgacctgaccagttcagagatggaggtgttgtcagtgagt
gcggcagccatgttggaagatgagatcagctggttggataactttgagcccagctggagc
tctgagatggagactagcgaggctgacaacatcctgcaggctggacacctccgcctcatc
aaaacactactgtcactctgtggcaccgagaaggaacacctgggtccttctctgatccag
cagctgttggatgacttcctgttccgagcgtcccgcatcatcctgaacacgtctgacccc
gcctctagctccccccccagccacgacttccaccccaagtgcagcacggccagcagcaga
ttggcagcctacgaggtgctggtgatgctagcagacagctctgtggccaacctacagctc
atcaccagagaactgctgtccatgcaccaccagtcagacccctcgctcagtaaggagttt
gacttcctcccgccggtggacagtcgctctgtgtcggggttcgtagggttaaagaacggt
ggagccacctgctatatgaatgctgtgttccagcagctgtacatgcagcctggcctggct
gaggcctttctgtctatagaggacgacacggagcagccagacgagagtgttttctgtcag
gtccagtctctgttcggacacctgatggagagcaagctgcagtactacgtccctgagaac
ttctggaagatctttaagatgtggaataaggagctgtatgtacgggagcagcaggatgcc
tatgagttcttcacttcactggtggaccagttggacgagcacctcaagaaaatcggccgt
gagcagatcttcaagaatactttccagggaatcttctctgatcagaagatctgcaaagac
tgccctcaccggtatgagcgagaggagacgtttatggcgctgaacctgggtgtaacttcc
tgtcagagtctggagatctcattggaccagtttgtcaggggggaggtgctagaaggaacc
aacgcctactactgcgaaaagtgcaaggagaagcgtaccacagtgaagcggacctgcata
aagtccctgcccagtgttctctgtatccatctgatgcgcttcggcttcgactgggagagc
ggacgctccatcaaatacgacgagcagatcaggtttccctgggtgctgaacatggagccc
tacacagtgtctggcatggctcgtcaggatgggggagcggaggggggagattgccggggc
gaggcagggggctcacccaggaagaaggtgaccatctcagagaactacgaactggtggga
gttgtagtccacagtggacaggcacacgctggacactactactccttcatcaaggacaga
cgcagtgctaggggaaggtggtataagtttaatgacaacgtggtcgaggagtttgatatg
aatgacgagactctggagtacgagtgctttggaggagagtaccggcctaaagtctacgac
cagtctaacccctaccctgacgtgcggcggcggtattggaacgcctacatgttgttctac
cagaggatcagtgaccagaactctcctgttctccctaagaagagcagagtcagtgccatg
aggcaagaggcagaagacctcacactttcggcaccctctagcccagatgtcagtccccag
tcgtcccctcggccccccagggccaacaatgaccgtctctctgtcctgacccgcctcgta
cggaagggagagaagaaaggactgtttgtggagaagatgcctgctaggatctaccagatg
gtgagagatgagaacctgaagtttatgaagaacagagatgtgtacaacagcgactacttc
aacttcactctgtcactggcctccgtcaacgcgacaaagctgaagcacccagcctaccag
gccatggccagagagagtctccagttggcggtccacttcctgttccacacctacctccac
accaagaagaagctgcgggtggacacagaggagtggatggctacggtggaggtgctgctg
tctaaaagcagtgaagcctgtcactggatggctcagtacctggtgggacctgaggggcga
gagatcaccaaggtgtgtctgttggagtgtggggtgagggaggtgagggtcgtagtggca
gccatcttggagaaaaccttagagagtgctctccacttcgctgactctggattggacagc
ctgaccgatgcgctcctctccctattggacaaagacgttcctgagaacgtcaaacactgc
aaccaatacttcagcctcttcagcaactttgctcagaggggctctggtccgtgtcagttg
ttgttgaaacactcagcatatcgcaggatgctcatcttcctccttggacccaacagacag
aacaaccagaatcggaggtggagtccagcccaggccagagagttcctgcacctgcactcc
actctggccctgatgactctccactcagacctcaacacacagcacacacatgatcaaggt
gtctgtaagctgaatgtgagcagtgtccctgcctcctccaccctcctccagctcgacgct
gacatcatggcctcgctcttcacccacgagggacagccttacctgctggaggtgatgttt
gcggtgcgggagttgtccggccctctgactgtgctgatagagatggtgacgtactgctcc
ttttgtaatgaacccttctccctgggagtactacagctgctcaagactcagttggagacc
gctccgccccatgagctgaagaacgtgttccagctactacaggagctgctggtggtggag
gatcctcttcagactcagagactgaagtacgccttcgagtcagagaaaggtctgctagca
ttgatgcaccagagtaacaatgtggacagcagccgctgctatcagtgtgtcaagttcctg
gttaccctggcacagaagtgtgttcctgctaaggactattttaaagatctgtctggtcac
tggagctgggcagtgcaatggctgcagaaaaagatgtcggaacactactggactcctcag
agcaacgtgtccaatgagacgtccacagccaaaacattccagcgcaccatctcagcccag
gacacgctggcctacgccacagcactgctcaacgagaaggagccatctggcagcagcaac
ggctctgacggtagtccagccaacgagaacgccgaccgcagcctccgacagggttctgag
tctcccatgatgcttggtgattcaaagagtgatctggaggatgttgacccttag
DBGET
integrated database retrieval system
