Oncorhynchus nerka (sockeye salmon): 115108547
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Entry
115108547 CDS
T07952
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115108547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115108547
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115108547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
115108547
NCBI-ProteinID:
XP_029488885
LinkDB
All DBs
Position
LG24:complement(53925536..53964829)
Genome browser
AA seq
2366 aa
AA seq
DB search
MATVLLQALERAEIAKLPKAVQNKLEKLFSDLQYEIDSLKSHQEQFRVDSEQQFFEKVQR
LEQSQEQFVTQTEQHHKLREEFTKIDEELKSVLEKNKEYEINQEKLTSEQAQLCKAKNEL
EAEKRELVRTLERRSQEVAYLSEDLQRLNDKVAEVNASKMGLQLKLDELESSEVNIKYRE
KRMEQEKELLRGQTVWLNTELKAKSEELLALSRQKGNQILELKCSLENKEDELNRVQDQV
TSLKTSNEGLQKQAEDIINKLKEDKEQQASMEEKFRNELNANIKLSNLYKGAAADSESKS
KELSGAVEELHKLLKDAGEANKALEVRLQEMDDCRDNEAAALKERIVNLEKELENANELL
SDTKLRGSAGAASVLSEETITTMSPTAVAVAKIVKPGMKLTELYTAYVETQEALQLERVE
NKRVNKYLDDIVQEVEAKGPILKRQRDEHERMQKSVASLSSKLEQAVKEVHRLQKVTDEA
NKRSSVLERDNQRSDVQLADMGQQIRVLLIELEEARGNHVAHDEEVSSADISSTSEVITQ
HLVTFRGVEELQQQNQRLLVALRELSEAQEREEEETTGTKCSELERSLEKAQAELEALRE
QRSHQMQLAESIVRQRDMYRVLLAQATGVSFPQQGAAAAEEFSSTPRRSPAATPTTPTGI
ITMATESTEVVEAKAALRQLQEVFSSYKRERSESDKALMEQSEKLQKQVSDQRFQNAKIS
TQLEFTSKRYEMLQDNVKGYRKEIASLMEKGQIMAAAAQKCEQTVHTMTQDLRVVQEKLN
MAEGRAESLRKEREMLKLVESRLTQEKETMQTQQRGQNMLLTNLKTIEATLERSETDTRQ
RLNAQIEKQEREIGQLQKRLEHEVEQRHLLSRNQDLQLMDAKRQLEAQTALLQKTRDQLS
AAQLEVSSLRLQQGSGEGGRLSLSSPPTPMGIRGFQVSEGDSEDLHGRLKQAETRAEELT
EQLRTATSSMELYRAMGQSLEESLDKEMQVTEQARSAIEERVKEAQEQHRQLEKKLLEAE
KEKQGLQEEKMKALASVEQQVAVLRRSLSSVQADHQEALQMAAVAAAQEQQAMLDSQEQA
KLASEAQDKYEREMMLHAADVESLQAAKAQALQAATLKQQLEERAQRASAQLLEARVSWE
EQERILKEEMSKVVSRSEELQRQNSLLHEQIQTMSCKMAATLQRQANESPLNISLTEEGK
SQDQVLEILRFVRREKEIAESRFEVAQGESLRHRLRVEHLERELRELQESLSAERERMQV
TAKTLAKHDELMKKTETMSVLMETNKMLREEKERMEQELQQTQAKVRKLESDIMPMQESN
AELSEKSGMLQAEKRILEEDIKRWKARTQHLVSQQKDTDPEEYKRLHSEKEAHLKRIQQL
TEETGRLKAEVARSGGSVTSLQSQVQMLREGLGKVSSDRDARRRSMEAMNLDIQEKFRTI
TQVKKIGRRYKTQYEELKVEHDKMVFEAASTPAQEQEAQQASAQELQGLKDSLGQAETRT
KDLEGQLDNLNKVVGEREAEVRGSQEQASRLQTELTRLRQELQEKASQEDTLRQQMAEKE
EKTRKAFVGAKQRINQLMGSKDQLQKENEELKQQREELEVRVSALKSQYEGRLSRQEREL
RDLREQQERHGEQRDEPLEQGPSKAQEQQRTTEQRGPLKTTQAADRGSTSTSEPPTANIK
PTPLGAQGPSKPPAIPGNKPTPRASIRPMITPATVPTPTPTATVMPTTQVENQEAMQSSE
GPPEHVTVYGSASGSVRSTSPNVQTTNPMLVVQQTQTTAFVQPTQQQSLPHTEPANQEQP
PAPVMEAAPSSQMERPSTSTAVFGTVSATPGTSSMSKRPREEEQDSSMVADTDTPQEDPS
EPPIPKKLRIIQRVDPEEPEAQEEVLAEGSAEGLVPGESQEAPETSQQVVEEYPVLEEAE
EGAASQSVPVELLLSETAFISFSYDANEEPPQHDVIVIVTDSESEDEQQEEDEEEEPDYD
EEEEDDEEEEDEDDGGMGDEGEESNDGSRDGNEAYEGDDTEGPDGTDPGTETEESLGASD
STQRPADSQTHSFEGSSSMEAFSSDPTSSAPRMHQSPRRAPHPLPPRLNITQERGPTAQV
QRPMRRQSVGRVPQLTPGMASGGVSHNIGQHFFDDDDRMVPSTPTLVPPHRSDSFAEAIH
SPQVAGVPRFRFGTPEDLMPQTTTSHSDLGHLASQGGLGMYDSPLFLPGHEDESGGLSVP
TTPLQVAAPVSIFAEVPPSDGTEHTSQSVPMVTTSTPGLVVAEGPSPGDERDDVFMAPGG
DLVEVSLEPVMSRAREIEEPTQVSDDCGLPSTSQELSSSSADTSRTQPKPSRPGHSRQLQ
RWTENRMRRGTLPSRGVTGTGRRFAR
NT seq
7101 nt
NT seq
+upstream
nt +downstream
nt
atggctacagtactacttcaagcgttggagcgcgctgagatagcgaagctaccaaaagct
gttcaaaataaactagaaaagttattttctgatctgcaatatgaaatagattccctcaag
tcacaccaggagcaatttagagtcgatagcgaacaacagttctttgagaaagtgcaacgt
cttgaacagagtcaggaacagtttgtgacccagactgaacagcaccacaaactccgagag
gagttcaccaagatcgatgaagaactcaagagtgtactagaaaagaataaagagtatgaa
atcaaccaagagaagttgacatctgaacaggcccagctctgtaaagccaaaaatgaactg
gaggcagagaagcgggagcttgtgcgtacattggagaggagatcccaggaagtggcctat
ctgagtgaggacctgcagcgcctcaatgacaaagtggcggaagtcaatgcctcaaagatg
gggctgcagctcaagttggatgagcttgaatcctcagaggtcaacatcaagtaccgtgag
aagcgtatggagcaggaaaaggagctgttgcgaggccagactgtctggctgaacacagag
ctcaaggctaaaagtgaggagctgctggctctttcacgccagaagggcaaccagatcctg
gagctgaagtgcagcttggagaacaaagaggatgagttgaacagagtccaggaccaagtg
accagtttgaagacttcaaatgaaggccttcagaagcaggctgaagacataatcaacaaa
ctgaaagaggataaggagcagcaggctagcatggaggagaagtttagaaatgagctgaat
gccaacataaagctctccaacttgtacaagggagctgctgcagactctgagtccaagagt
aaggaattgagtggggctgtagaggagctgcacaagctgctgaaagatgctggagaggcg
aacaaggccctagaggtgaggttgcaggagatggatgactgtcgggacaatgaggctgct
gcgctgaaggagaggatcgtcaatttggaaaaagaactggagaatgccaacgaactgctg
tccgacaccaagctcagaggctctgccggtgcagcctcagtgctgtcagaggaaacgatt
accaccatgtccccgaccgcagtcgccgttgccaagatagtcaaacctggcatgaagctg
actgagttgtacacagcgtatgtggagacccaggaggcactgcagctggagcgtgtggag
aacaagcgggtgaataagtacttggatgacatagtgcaggaggtggaggctaagggtccc
atcctcaaacgccagagggatgagcatgagcgtatgcagaaatctgtggccagcctttca
tccaagctggaacaggcagttaaggaggttcaccgtctgcagaaggtgactgacgaggcc
aacaagcgctcttctgtcctggagagagacaaccagaggtctgatgtgcagcttgcagac
atggggcagcagatccgtgtcctactcattgagctggaggaggcgcgtggtaaccatgta
gcccacgacgaggaggtgagctctgctgacatcagcagcacgtcagaggtcatcacgcag
cacctggtgacgtttcgtggggtggaggagctccagcagcagaaccagcgcctcctggtg
gccctccgagagctcagcgaggcacaggagagggaggaggaagagaccactggcaccaag
tgcagtgagctggagcgcagtctggagaaggcccaggcagagctggaggctctgcgagag
cagcggagccaccagatgcagctggctgagtccatcgttaggcagagagatatgtacaga
gtgctgctggcccaggccaccggagtcagcttccctcagcaaggtgcagcagctgctgag
gagttctctagcaccccccgccgctcccctgccgccacccccaccacacccactggaatc
attactatggcaaccgagtcaaccgaggtggtagaggccaaggcagccctccgacagttg
caggaagtgttctcttcctataagagggagaggtctgagagtgacaaggccctgatggag
cagagtgagaagctacagaagcaggtgtctgaccagagattccagaatgccaagatatcc
acccaactggagtttacctccaagaggtatgagatgcttcaggataatgttaagggctac
aggaaggagattgcctctctgatggagaagggacagataatggctgctgcagcccagaag
tgtgagcagactgttcacaccatgacccaggacctgagggttgtccaggagaaactaaac
atggcagagggtcgtgctgagagcctcaggaaggagagagagatgctgaagctagtggag
tccagactgacccaggagaaggagaccatgcagacccaacaacgaggacagaacatgctg
ctcaccaatctcaagaccatagaggccacgttggagcgctccgagacagacaccaggcag
cgtctgaacgcccagatagagaagcaggagagggagatcggccagctgcagaagagactg
gagcacgaggtggagcaacgccacctgctgagcagaaaccaagatttgcagctgatggat
gccaagaggcagctggaggcccagacggccctgctccagaagaccagggatcagctgagt
gctgcccagctggaggtgagctctctcaggctgcagcagggcagtggagagggtggtcgt
ctgtccctgagctccccgcccactcccatgggcatcagaggtttccaggtttcagaaggg
gactctgaggatctgcatggccgcctgaagcaggcagagacacgggcagaggagctgaca
gagcagctgaggaccgccacctccagcatggagctgtacagagccatgggccagagccta
gaggagtccctggacaaggagatgcaggtgacagagcaggctcggtctgccattgaggag
cgtgtgaaggaagcccaggagcagcaccgtcagttggagaaaaagctcctggaggcagag
aaggagaagcagggcctgcaggaggagaagatgaaagccctggcctccgtggagcagcag
gtggctgtgctgaggaggagtctgagcagtgtgcaggcggaccaccaggaggctctacag
atggcggcggtggcagcagcccaggaacagcaggccatgctggacagccaggagcaggcc
aaactggcgtcagaggcacaagataagtatgagcgtgagatgatgctccacgctgcagac
gtggagtccctccaggcagccaaggcccaggctctgcaggcagccacgctcaaacagcag
ctggaggagagggcccagagagcctctgctcagctgctggaggccagagtctcctgggag
gaacaggagaggatcctcaaggaggagatgtctaaggtggtgtctcgttctgaagagctg
cagaggcagaacagcctcctccatgaacagattcagaccatgagctgcaagatggccgcc
accctgcagcgccaggccaacgagagccctctgaacatctccctcacggaggaaggcaag
tctcaggaccaggtccttgagatactcaggtttgtgcgccgagagaaggagatagcggag
tctcgattcgaggtggcccaaggagagagtcttcgccataggctgagagtagagcacctg
gagagagagctgagagaactacaggagagccttagtgctgagagagagcgaatgcaggtg
acagctaagaccctggctaagcatgatgagctgatgaagaagactgagaccatgagtgtc
ctgatggagactaacaagatgctgagggaggagaaggagaggatggagcaggagctccag
cagacacaggctaaagtgcgtaagctggagtcggacataatgcccatgcaggagtccaac
gctgaactgagtgagaagagcggcatgctgcaagcagagaagaggattctggaagaggac
atcaaacgctggaaggccagaacacagcacctggtgagccagcagaaggacacagaccca
gaggagtacaagcgtctccactctgagaaggaggctcacctcaaacgcatccagcagctc
actgaagagacgggcagactcaaggctgaggtggccaggagtggcggctcggtgacgtcc
ctccagagccaggtgcagatgctgcgtgagggtctggggaaggtgagctctgacagggat
gctcggaggaggagtatggaggccatgaacctggacatccaggagaagttccgcaccatc
actcaggtcaagaagatcggacgccgctacaagacacagtatgaggagctcaaggtggag
cacgacaagatggtgtttgaggcagcgtccaccccagcccaggagcaggaggcccagcag
gcctcagcccaggagctccagggtctgaaggactccctgggacaggctgagacccggacc
aaagacctggagggacagctggacaacctcaacaaggtggtgggtgagcgtgaggcggag
gtgcgcgggtcgcaggaacaggcctccaggctgcagacagagctgaccaggctgagacag
gagctgcaggagaaggcctcccaggaggacaccctcagacagcagatggctgagaaggag
gagaagaccaggaaggcctttgtcggggccaagcagaggatcaaccagcttatgggctcc
aaggaccagctgcagaaggaaaatgaggagctgaaacagcagagggaggagctggaggtc
agagtcagtgctctgaagtcccaatacgagggccgtctgagccgccaggagagggagctg
cgggacctgagggaacagcaggagagacacggagagcagagggatgagcctcttgaacag
ggtcccagtaaggctcaggaacagcagaggaccacagagcagcgaggaccactgaagacc
acccaagctgcagaccggggcagcaccagtacctctgagccccctactgccaacatcaag
cctacccctctgggtgctcaaggccccagcaagccccctgccatccccgggaacaagccc
accccccgggcaagcatcaggcccatgatcacccctgccactgtgcccacccccacccct
actgccaccgtcatgccaaccacacaggtggagaaccaggaagccatgcagtcatccgag
ggcccgcctgagcatgtgactgtttacggcagtgccagcggttcagtacggtcaaccagc
cccaacgttcagaccaccaacccaatgctggtggtccagcagacccagaccacagccttc
gtccagccaacacagcaacagagcctgccccacactgaaccagccaatcaggagcagccc
ccggccccagtaatggaagctgcacccagttcgcaaatggagaggccgtcgacgtcaaca
gccgtgtttgggacagtttcagccaccccaggaacatcttccatgtccaagagacctcgt
gaggaggagcaggacagctctatggtggctgacacagacaccccccaggaggacccctct
gaaccccccatccccaagaagctacgcatcatccagagagtcgacccagaggagccagag
gcccaggaggaggtgctggctgagggcagtgcagagggactggtgcctggagagagccag
gaagccccagagaccagccagcaggtggtggaggagtacccagtactagaggaggctgaa
gagggtgcagcgtctcagtctgtccccgtagagctgctcctgtccgagaccgcattcatc
tcattttcatacgacgccaacgaagaacccccccagcacgatgtcatcgtcatagtgacc
gactctgaaagcgaggacgagcagcaggaggaggatgaggaagaggaaccggactatgat
gaggaggaggaggatgacgaggaggaggaggatgaagatgatggagggatgggggatgag
ggggaggagagcaatgatgggagcagagatggcaatgaggcatatgaaggcgacgacaca
gagggtcctgatgggacagacccaggcacggagacggaggagagtctaggagcatctgac
tccacccagcgcccggctgactcccagacacacagcttcgagggcagcagcagtatggaa
gccttctcaagtgacccaaccagctctgctcccagaatgcaccagtctccacggagagca
ccccatccgctgcccccccgcctcaacatcacccaggaacggggacccactgctcaggta
cagcgccccatgcgtcgccagtcggtaggcagagtccctcagctcacccctgggatggcc
agcggcggagtaagtcacaatattggacagcacttttttgacgatgatgacaggatggtt
cccagtactcctactctggtgccgccacaccgctctgacagctttgcagaagctatccat
tctccccaggtggctggtgtaccccggttcaggttcggcaccccagaggacctgatgccc
cagaccaccacctcccactctgacctgggacatctggcatcacaaggaggtcttgggatg
tatgatagtcctttgttcctgcctggtcatgaggatgagtctgggggcctcagtgttccc
accacacccctgcaggtggctgccccagtgtccatatttgcagaggtcccgccatctgac
ggcacggaacacacctctcagtctgttcccatggtaaccacctcaaccccaggcttggtg
gtggctgaaggacctagtcctggggacgagagggatgatgtcttcatggcgccgggggga
gaccttgtggaggtgtctctggaacctgtaatgtctcgggcgagggagatagaggaacct
acccaggtctcagatgactgcggcctgccttctaccagccaggaactctcctccagctct
gcagacactagtaggactcagcccaaaccctctagaccaggacacagccgacagctccaa
cgctggacagagaaccgcatgaggagagggacgttgccatcacggggtgtaactgggact
gggaggagatttgcccgataa
DBGET
integrated database retrieval system
