Oncorhynchus nerka (sockeye salmon): 115108591
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Entry
115108591 CDS
T07952
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115108591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115108591
03036 Chromosome and associated proteins [BR:
one03036
]
115108591
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115108591
Coactivators
SAGA/TFTC/STAGA complex
115108591
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115108591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
115108591
NCBI-ProteinID:
XP_029488972
LinkDB
All DBs
Position
LG24:57382346..57396413
Genome browser
AA seq
821 aa
AA seq
DB search
MPTTENSANETQAEKSASPANSGSGTANISDTIVQVGATVKAPTPSASCPAIPAFISKGT
TKDPDPAHTQPQNANNGSSATQLPLSVMHVAPTTATVTVAPVQASTQPVTSSTTIKSVVS
NLPPTVVMITTGLRPISPMVAGPIVSSPTVTMSAQPPVRMSSPLGPAVTRVATATQAPGK
AAVIAIPRPTTFQQPAASIRPPQTTSVQLPANFHIPPGMVLIRSDSGQLMLVSQQALAAA
QGLAARTPGTGTSPSPRPPTTQVSAATVVRKAENPGVIRVPPPPSPHVTTAQSTPMVKVV
GAAPTPPAGQIQITRPMIRPVAPVTVTRSPGPGPLIIPTKPTNTPRATPPTITPEVLENV
KKCKNFLVTLIKLASSGTHSADMAKNVRELVKSLLDGRLEPEEFTDQLYRELKSSPQPYL
VPFLKKSLPAVRQLTPNPQLFIQEVDQPKPQAPATSKASASKAPASKAPAPTAGRTPTLL
STNSRPAHLSAASGQSIKSTQLVIQQPRGVVYKPAVTNPTPARTYLSVQNRSLVKPMVIQ
SGQYYNTGAVVRRTPFLVPPPPAQRHAFKDSVGSFREEDDINDVASMAGVNVSEENARIL
ATNSGLVGSVERSCQDKPFLSPAPLLTHILHTGEKFGVSEVGSDVVSLVSHATQERLREL
LEKVTVVAQHRKIALKEDYSHVQTSDVRSQLHFLEELERLEKQRRDDEERETLLRVARSR
CNTDDPDQQLLKQRAKELQQLEQAQLQHREANLTALAAIGPRRKRPLDSNGNQVGPGGIV
SVLQRAGVQRVTGVSLRDLLFCLEQDPPLRHSLTLYKGLLR
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccaccgaaaactccgcaaatgaaactcaggcagagaaaagtgcctccccggca
aacagtggcagtggaaccgcgaatatctcggacactattgtgcaggtgggagcgacagtc
aaagccccgacaccttctgccagttgccctgcaatacccgccttcatttcgaaaggtaca
acgaaagaccccgaccctgcccatacccagccacagaacgcaaataatggatccagtgcc
acccagcttcctttgtccgtgatgcatgttgcacctactaccgcaaccgtgactgtcgca
cctgtccaggcgagcactcaaccggtcacgtcatccacaaccataaagtcagtcgtgagc
aacctgcctccaacggtggtcatgataaccacgggactgagacccatttctccaatggtt
gcgggaccgatagtgagctctccaacggtgaccatgagcgcacagccaccagtgcgcatg
agctctcctttgggaccagcggtgactcgagttgccaccgcgacccaggcaccggggaag
gctgcagtgatagccataccaagaccaacaacttttcagcaaccagctgcatcgatcaga
cccccacagaccacgtccgtccagcttccagccaactttcatatcccgccaggtatggtg
ctcatccgtagtgacagtggccaactgatgctggtttcccaacaagctttggctgcagcc
cagggcctcgcagccagaactcctggcactgggacctctcctagccctaggccaccaacc
acacaggtgtctgcagcgactgtcgtgagaaaagctgagaatccaggtgtgatcagagtg
cctcctcctcctagcccccatgtgaccacagcacagagtacacccatggttaaggtcgta
ggggctgctccgacccctcctgcaggccagatccagatcaccaggcctatgatccgccca
gtggcccctgtcacagtcacccgttctcctggccctggtcctctcatcatcccaaccaaa
cccaccaacacccccagggccacaccccccaccatcacacctgaggtcctggagaatgtg
aagaagtgtaagaacttcctagtgacgctgatcaagctggcctctagtggaacccactct
gctgacatggccaagaacgtccgagaactcgtcaagagcctgctggatgggagacttgaa
cctgaggagttcactgaccaactctaccgtgagctcaagtcttctccccagccctacctg
gtaccctttctcaagaaaagtctcccagctgtgcggcagctcacccccaacccacagctg
ttcatccaggaggttgaccaaccgaagccacaggctccagccacctccaaggcctcggcc
tccaaagccccggcctccaaagccccggcccccactgcaggccgcacccctaccctcctc
tccaccaactctaggcctgcccacctcagcgctgctagtggccagtcaatcaaatccacc
cagctagtgatccagcagcctagaggtgtggtgtataagcctgctgtgacaaaccccacc
ccggcccgtacatacctgtctgttcagaacaggagcctggtcaaacctatggtcatacag
tcaggacagtactacaacacaggtgctgttgtcaggcggactcctttccttgtcccaccg
cctccagcccagagacacgccttcaaggacagtgttggttctttcagggaggaggatgac
atcaacgatgtggcctccatggctggggtcaacgtgagcgaggagaatgcccgtatccta
gcaaccaactctgggcttgtgggctctgtggagcgatcctgtcaggacaaacccttcctg
tccccagccccgctgctcacacacatcctccacactggtgagaagtttggagtgtccgag
gtggggtcagacgtggtcagtctggtgtctcacgccacacaggagcgtctcagagagctg
ctggagaaagtcacagtggtggcacagcatcgcaagattgccctcaaggaggactacagt
cacgttcagaccagtgatgtgcgttcccagctccacttcctggaagagctggaacgtctg
gagaagcagaggagagacgacgaggagagggagacactgctccgcgtcgccaggagtcgc
tgtaacaccgatgacccagaccagcaactactgaaacaacgggccaaagagctccagcag
ttggagcaggctcagctgcagcacagagaagccaacctcactgccctggctgccatcggg
cctcgcaggaagagaccactggactccaatggaaaccaggtggggccaggtggcattgtg
tcagtactacagagggctggggttcagagagtgactggggtctctctgagggacctactc
ttctgtctggaacaggaccctcctctacgacactctctcactctctacaagggcctgctc
agatag
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