Oncorhynchus nerka (sockeye salmon): 115108869
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Entry
115108869 CDS
T07952
Name
(RefSeq) thrombospondin-4-like
KO
K04659
thrombospondin 2/3/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115108869
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115108869
09144 Cellular community - eukaryotes
04510 Focal adhesion
115108869
09142 Cell motility
04820 Cytoskeleton in muscle cells
115108869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115108869
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115108869
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115108869
Membrane trafficking [BR:
one04131
]
Endocytosis
Phagocytosis
Opsonins
115108869
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115108869
Exosomal proteins of colorectal cancer cells
115108869
Exosomal proteins of bladder cancer cells
115108869
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115108869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
COMP
EGF_3
EGF
Motif
Other DBs
NCBI-GeneID:
115108869
NCBI-ProteinID:
XP_029489293
LinkDB
All DBs
Position
LG25:complement(7510357..7521732)
Genome browser
AA seq
747 aa
AA seq
DB search
MLWILVLVISLSVSSELVAGQRDGEIINQIKGTNQALAEIKELLKQQIQEIVFLKNTVME
CEACGMQGPSRPSCDPNPCHPGVKCIETAGGIKCGPCPEGMVGNSTRCMDVDECVVKPCH
MGVRCINTSPGFRCGPCPTGYTGPQVQGVSLSYATKNKQVCKDINECEGPKNGGCVENSN
CVNTPGSFRCGLCNAGYVGDQRKGCKPERACGNGQPNPCHASGECIVQRDGKIECQCGVG
WAGNGYFCGSDIDIDGFPDEKQECAERNCAKDNCQTVPNSGQEDADKDGIGDACDEDADG
DGILNTQDNCVLVPNVNQRNVDEDDFGDACDNCRMIKNNDQKDTDIDRLGDECDEDIDGD
GIPNNLDNCKRVPNTDQKDRDGDKVGDACDSCPYVPNPDQLDMDNDLIGDPCDTNKDSDG
DGHQDSQDNCPAVINSAQLDTDKDGLGDECDDDDDDDGIPDLLPPGPDNCRLIPNPLQED
SDGDGVGNLCENDFDNDTIIDSIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVL
DQGREIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMW
KQVEQIYWQANPFRAVAEPGIQLKAVKSNTGPGENLRNSLWHTGDTSDQVKLLWKDARNV
GWKDKTSYRWFLQHRPQDGYIRVRFYEGPQLVADTGIIIDTTMRGGRLGVFCFSQENIIW
ANLRYRCNDTIPGDFDTYQAQQVQLQF
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgctgtggatcctggtgttggtgatttctctcagtgtgagcagtgagctagtagctggt
cagagagatggagaaatcatcaatcagatcaagggaacaaatcaagctctggctgagatc
aaagaactgctgaaacaacagatccaagagattgtgttcctgaagaacacagtgatggag
tgtgaagcctgtggcatgcaaggtccctctcgcccctcctgtgaccctaacccctgccac
ccgggggtaaagtgcattgaaacagctggcggcatcaagtgtggcccctgccctgagggc
atggtgggcaacagtacccgatgcatggatgtggacgagtgtgtggtgaagccttgccac
atgggtgtgcgctgcataaacacgtccccaggtttccgctgtggcccctgtccaactggc
tacactggccctcaggtgcagggagtaagcctctcctacgccactaaaaacaaacaggtc
tgcaaggacatcaatgagtgcgaaggacccaagaatggaggttgtgtggaaaattccaat
tgtgtaaacacacctggctcgtttaggtgtggcctctgtaatgcaggctatgttggggat
cagcgcaagggctgtaagcctgagagagcatgtggtaatggccagcccaacccctgccat
gccagcggagagtgtattgtccaacgagatgggaaaatagagtgtcagtgtggggtggga
tgggctggcaatggctacttctgcggatctgatattgacattgatggcttccctgatgag
aaacaggaatgtgccgagaggaactgtgccaaggataactgtcaaacggtacccaactct
ggccaagaggacgcagacaaggatggtataggagacgcctgcgatgaggatgcagatggg
gatggaatcttaaatacacaggacaactgtgtgctggtaccaaacgtcaaccaaagaaat
gtggacgaagacgactttggagacgcctgtgacaactgccgtatgatcaaaaacaacgac
cagaaagacactgatattgatagactgggtgacgaatgtgacgaagacattgatggcgac
ggaatccccaataacctggacaactgcaaaagggttcccaatactgaccagaaggatcga
gatggggacaaagtcggagatgcctgtgacagttgcccttacgttcccaaccctgaccag
ttggatatggacaacgacttgatcggagacccttgtgacaccaataaggacagtgatggt
gacggtcaccaggactctcaggacaactgccctgcggtcatcaacagcgcccagctggac
acggacaaggatggcctgggggacgagtgtgatgatgacgatgatgatgatggtattcct
gaccttctgcccccgggaccagacaactgtcgcctcattcccaaccctctgcaggaggac
tctgacggtgatggggttgggaacctgtgcgagaacgactttgacaacgacaccatcatc
gacagcatcgatgtgtgcccggagaacgctgaggttactctcacagacttcagggcctac
cagacagtggtgctggacccggagggagacgcacagatagaccctaactgggtggtgctc
gatcagggtagagagatcgtccaaactatgaacagtgaccctggactggctgttggttac
acggctttcaacggtgttgacttcgaagggacgttccatgtgaatacggtaacagacgac
gactatgcaggcttcatctttggctaccaggactcttcctccttctacgtagtgatgtgg
aaacaagttgagcagatctactggcaggccaatccgttccgagctgtggcagaaccaggg
atacaactgaaggctgtaaagtccaacacgggaccaggtgaaaatctacgtaactccctg
tggcacaccggagacaccagtgaccaggtgaagctgctgtggaaagatgcccgcaacgtg
ggctggaaggacaagacctcctaccgctggttcttgcaacacaggccccaagatggatac
atcagggtgcgtttctatgagggtcctcagctagtggcagacacaggcatcatcatagac
accaccatgagaggaggcagactgggcgtcttttgcttctctcaggagaacatcatctgg
gctaacctacgctaccgctgcaatgatacaatccctggggacttcgatacataccaagcc
caacaggtccagctgcagttctaa
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