Oncorhynchus nerka (sockeye salmon): 115109093 Help Entry 115109093         CDS       T07952                                  Name (RefSeq) roquin-1-like isoform X1   KO K15690   RING finger and CCCH-type zinc finger domain-containing protein Organism one  Oncorhynchus nerka (sockeye salmon) Brite KEGG Orthology (KO) [BR:one00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:one03000]     115109093    04121 Ubiquitin system [BR:one04121]     115109093 Transcription factors [BR:one03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     115109093 Ubiquitin system [BR:one04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     115109093 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-C3HC4_4 zf-RING_2 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf-CCCH_UNK zf_CCCH_4 Prok-RING_4 zf-RING_6 Motif Other DBs NCBI-GeneID:  115109093 NCBI-ProteinID:  XP_029489546 LinkDB All DBs Position LG25:5454160..5484033 Genome browser AA seq 1114 aa AA seqDB search MFGIVLFYYSGICQIFCITLFFRKENKPHATTHFRIYLSLKKKASVEATVLPQRPPWVTM PVQAPQWTEFLLCPICTQLFEESLRKPISLGCGHTVCKMCLNKLHRKACPFDQTAIATDI ELLPVNTALLQLVGGQVPKRQPTTLVTGAEDIAHYEKASECVEELAQYLKPLSNSRGVGL STSSAQSSLSRPMQRKLVTLVHCQLVEEEGRVRATRAARSLGERTVTELILQHQNPQQLS SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEDFWTYEALRREHDSQIVQIAMEGGLRIAP DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL ANIDPSPDSPPPTWELLDTGLVAVKTVVHGLVDFIQNHSKKGSDPQQPPQHSKYKTYMCR DMKQKGGCPRGTSCTFAHSQDELEKYRKMNKRLAARRPLSLSLTQLNEVGLLPEEVGMLE GLAHKGLTNGMVASVTGSALPQLISRGADPSYEPMMRKSQGSLSAPSSPPDLLDPVPNRA MAHPRMAVDHLAMHKQMPRRPSMYPPQQGELFYPPEPRAPPSALQYEASQNAPGNPPYPY QPSQYPPQPRYVRNPPPTNDPALPPYPGTYPQERQCPPPPQLSSSHFSNANPQGFAPPPH YDGRRHPAYPPPPPQSYPHREDPSMPADEASRERYLPEGYHPSGPHPSHMRPYTPRESYC RPQPTPSLDYLHRRRQEIMAQLEDGKQVTPPPFTPSPTLPHHYESNYTQEQQQYLENSQA FSKYREPDYASQYSPWSCDTIGSYIGSKEGKSRDSMERMNAEGKGVEGRRRAAEARDDDP IIPFGSLPTVSRFGVISRTPKTGYLTAGPGQAMTLSQGTNGPKHGAATGWGAAGYSQPPQ AHLSERPVKEREQLTMELQQVNQQINKQTAQADHPSPEEWSSGNISSQQLSLELHHVERE IGKRTRQIALEHLVSHDGSGAYKLKPTENGQRAEHSLVLSEGCNGPSGVLQDGSVASCGL SCLTSKTSSLSLSADLSIAGGTDRKTNGVVHLCS NT seq 3345 nt NT seq  +upstreamnt  +downstreamnt atgttcggaatagttttattttattacagtggaatctgtcagatcttttgcatcactctg ttttttcgaaaagaaaacaaaccccacgcgacaacacactttaggatctacctttctttg aaaaagaaagcatctgtcgaagctacagtgcttccccagagacctccgtgggtgacgatg cctgtgcaagcgccacaatggacggaattcctgctgtgtcccatctgcacacagctgttc gaggagagcctccgcaagcccatcagcctgggctgcggccacaccgtctgcaagatgtgc ctgaacaagctgcatcgcaaggcctgccccttcgaccagacggctatcgccaccgacatt gagctgctgccagtcaacacagccctgctgcagctggtgggaggacaggtgcccaaacgg cagccgaccaccttggtgacaggggcagaggacatagcccactatgagaaagccagtgag tgtgtggaggagctggctcagtacctgaaacccctgagcaacagcagaggtgtggggctg agcaccagcagcgcccagagttctctgagtcggcccatgcagaggaagctggtgaccctg gtgcactgtcagctggtggaggaggagggccgggtaagggccacgcgggcggccaggtct ctgggggagcgcaccgtcactgagctcattctgcagcaccagaacccccagcagctctcc tccaacctgtgggctgcagtcagggcaaggggctgccagtttctcggcccagcgatgcag gaggaggctctgaagctggtgcttttggctctggaggacggctccgctctatccaggaag gtcctggtgctgtttgtggtccagaggttagagccacgcttcccccaggcctccaagacc agcataggccacgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaagcgt gacgaggactcgtccctgatgcagttgaaggaggacttctggacgtacgaggcgctgcgg cgcgaacacgactcccagatcgtccagatcgcaatggaggggggcctccgcatcgcccct gaccagtggtcttccctgctgtacggggaccagtcgcacaagtcccacatgcagtccatc attgacaagttgcagacgccagcgtcatttgctcagagtgttcaggagctgaccatcgcc ctgcagaggacaggtgacccggccaacctgaaccgcctgcgaccacacctggagctgcta gccaacatcgacccaagtccagactcccctccccccacgtgggagctgctggacacgggc ttggtggcagtgaagactgtggtacacggcctggtggacttcatccagaaccacagcaag aaggggagcgacccacaacagccaccccagcacagtaaatacaagacgtacatgtgtcgg gacatgaagcagaaggggggctgtcctcgaggaaccagctgcaccttcgcccactctcag gacgagctagaaaagtaccgtaagatgaacaagaggctggctgcccgccggcccctcagc ttatccctgacgcagctgaacgaggttggcctattgcccgaggaggtggggatgctggag gggctggcacacaagggcttgacgaatggcatggtggcgtcggtcacaggctccgccctg ccccagctcatctcccgcggtgccgacccctcctacgagcccatgatgcggaagtcccag ggaagcctaagtgcccccagctctcctccagacttactggacccggtgcctaatcgggcc atggcccatcccaggatggcagtggaccacctggccatgcacaagcagatgcccaggagg ccctccatgtacccccctcagcagggagaactcttctacccccctgagcccagggcacct ccatcagccctgcagtatgaggcctcccagaacgccccaggtaaccccccctacccctac cagccctctcagtatccaccccagcctcgctacgtccgaaacccccctcccaccaacgac ccggccttgcccccctaccccggcacttacccccaggagcgccagtgtccccctccccct cagctctcgagttcccacttctccaatgccaacccccaagggtttgcgcctcctccgcat tatgatggtcgtcgacaccccgcctacccccctccaccaccacagtcctatccccaccgg gaggacccctccatgcctgcggacgaggcctccagagaaagataccttcctgagggttac cacccctctggcccccaccccagccacatgaggccctacacccccagggagtcttactgc cggccccagcccactcccagtctggactacttgcaccgccgacgccaggagatcatggcc cagctggaagacgggaagcaggtcactcccccacccttcaccccctcacctactctgcca caccactacgagtccaactacacacaggagcaacagcagtacttggaaaactcacaagcg ttttcaaagtaccgcgagccagactacgcgagccagtactctccttggtcatgtgacact atcggctcctacattggcagcaaggaggggaagtccagagacagtatggagaggatgaat gctgaggggaaaggtgtggaaggcaggcgcagggctgccgaggccagagatgacgaccct atcatccccttcggctctctgcccaccgtgtcacgcttcggggtgatctcccgcaccccc aagacgggctacttgactgccgggccggggcaggccatgaccctctcacaggggaccaat ggccccaaacacggcgctgcaacagggtggggtgctgccgggtacagccagccccctcag gcccacctcagtgaacggccagtcaaggagagggagcagctgacgatggagctccagcag gtcaatcagcagatcaacaagcagactgcccaggcggaccatcccagcccggaggagtgg tcgtcagggaacatctccagccaacagctgagcctggagctccaccatgtggagagggag atcggcaagaggacccgccagatagccctggagcaccttgtgagtcatgatgggagtggg gcgtataagctgaagcccactgagaacgggcagagagcggagcactcgttggtcctcagt gagggctgtaacggtcccagtggtgtgctgcaggacggcagtgtggccagctgtggtttg tcctgccttaccagcaagacctcgtccctcagcctgtctgcagacctctccatcgctggg ggcactgaccgaaagaccaacggcgtggtccacctgtgctcctag

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