KEGG   Oncorhynchus nerka (sockeye salmon): 115109143
Entry
115109143         CDS       T07952                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03018  RNA degradation
one03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115109143
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115109143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115109143
   03041 Spliceosome [BR:one03041]
    115109143
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115109143
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     115109143
Spliceosome [BR:one03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    115109143
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 115109143
NCBI-ProteinID: XP_029489626
LinkDB
Position
LG25:7085824..7089701
AA seq 149 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQEKKPAGGKPQGVKNQH
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataacggacacttggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcattgacatggtgaag
gaagaggtggtgtccaagggccgtgggcgaggaggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtgtttggaggccgtggtcggggcatgcca
ggagtgggaatgccaggagtgggcagaggccagcagcaggagaagaagcctgctggtggt
aaacctcagggagtcaagaaccagcactga

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