Oncorhynchus nerka (sockeye salmon): 115109255
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Entry
115109255 CDS
T07952
Name
(RefSeq) cartilage intermediate layer protein 1-like
KO
K24436
cartilage intermediate layer protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115109255
Domain-containing proteins not elsewhere classified [BR:
one04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
115109255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CILP_C
CILP_8th
CILP
CILP_5th
Mucin2_WxxW
TSP_1
Ig_3
CarboxypepD_reg
I-set
TSP1_CFP_C
Ig_2
TSP1_spondin
CarbopepD_reg_2
TTR_TEN1-4
ig
TSP1_ADAMTS
Motif
Other DBs
NCBI-GeneID:
115109255
NCBI-ProteinID:
XP_029489832
LinkDB
All DBs
Position
LG25:11455455..11486645
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AA seq
1253 aa
AA seq
DB search
MWDVTKVSLLLPFLVAVATAQGPFRNSSLLRKWSQTGRSRKLAYNLLTEPQQTTGVTEWT
SWFNIDHPGGNGDYERLEAIQFYYRERVCARPVAMEARTTDWVAAAETGEVTHSSLEKGF
WCINKEQPYGRICSNYYVRFQCPPVQAYWMDWSAWGPCSATACNDVGIQVRQRKCMSIQP
MPLLLVPPCQGPQTERMECATLPCEAKWTQWGTWGACSVTCGKGRRIRRRTCVRTSITVQ
CVGQAAEIQKCGKYPCPTKCKRECPDGRPSEDCSRCVCVGHMLQGEVLSMTGVPVMGARI
ALASRPKIIRTRTDAKGLFRLPGVCSSSPSQLYIRKEKFAPATASTSSNSSGSSWVRAVL
KYAEKPYIVKHPEDKVRYEGQRVMLCCKAAGEPMPDKYYWYHNRTLLDRNVFKYEEDLVL
RDLKPEQTGHYYCKASSQTGSIKSSQAFLSVIAKGMPACNPTPKNHLIRLPMDCVQPGTD
SKLYNAGRCTHNKCVGSLDFDLRCRDGGGYCCGVQKMESRVINCGSYSLPIKAVTECGCL
KCVVPKVLVRGRVVTVDNDEPLRFGHMYVGKERVGTTGYKGGFTLNITPDTERLVVNFVD
PTEKFIDTPKVFIFDKRGGSVYHDVKVMRKQEPIDINAGETNTIDLGEIKGEDPIGQIVI
PPNSFLRKNGEVYEGTVKASVTFIDPRNITTAAAAPGDLNFVDDEGDMLPLRTYGMFSVD
FRDDTNQEVLGAGAVQVLLDTQHVKMQEHIPKMKLWSLNPDTGVWEEESDFHYTQTTSGG
NGRRKREERTFLIGNMEIRERRLFNLDVPENRRCYVKVRTYMSDKFLATEQLEGVVISLI
NLEPKPGFSSNPRAWGRFDSVITGHNGACLPAFCDAQVPDAYTAYVTGIMGGEELEAAPS
TPKMNPNIIGVSQPYLDKIDYQRSDHNDPALKKTAFRINLAKPNPNNLEETNGPIYPYQS
LISCENAEVNANHFRFFRVEKDKYEYNVVPFQENDLTSWTGDYLSWWPNPQEFRACFIKV
KIQGQREVMIRSQNHGGTHPETAGQLYGIRDIRSTRDMHVANISAACLEFKCSGMLFDQA
AVDRSLISVLPQGNCRRVDINSLLKEYLTKHPPTSPNNESHAFNMLAPVDPLGHNYGIYT
VTDQNPRVAKEIAIGRCFDGTSDGFSREMKSDTGVALTFSCPERTLTRESLFQRLQTNPS
QTLSQMARDMREAQGLQVRGRSSRVVTYPSESTSRRSSSSSRRRSTMRTQNRQ
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgtgggacgttacaaaagtgtcactactcctgcctttcctggtggcagtggcaacggct
caagggcccttcaggaacagctctctgctcaggaagtggagtcagacaggcaggagcagg
aagctggcctacaacttgctgactgagccacagcagaccacaggcgtgactgaatggacg
tcctggttcaacatcgaccatccaggggggaatggagactacgagcggttagaagccatc
cagttctactacagggagagggtgtgtgcccggccggtggccatggaggcccgcaccacg
gactgggtggcagcagcagagaccggggaggtgactcactccagcctggagaagggcttc
tggtgcatcaacaaggagcagccctacggacgcatctgctccaactactacgtccgcttc
cagtgcccaccagttcaggcctactggatggactggtctgcctggggcccctgttctgct
acagcctgtaatgacgtgggcattcaggtccgtcagaggaagtgtatgagcatccagccc
atgcccttgctactggttccaccatgccaggggccccagacagagaggatggagtgtgcc
accctgccatgtgaagccaagtggactcagtggggtacgtggggagcatgctcagtgacc
tgtggcaagggtcgcaggatcagaaggaggacctgtgtgagaacctctataacagtgcag
tgtgttggacaagcagctgaaatccagaaatgtgggaaatatccatgcccaaccaaatgt
aagcgtgagtgtcccgatggccgtcccagtgaggactgtagccgctgtgtgtgtgtgggc
cacatgctccaaggagaagtactcagtatgaccggtgtccccgtgatgggggccaggata
gcgctggccagccgaccaaagatcatccgtacccgcactgacgccaaaggcctctttagg
ctcccaggggtctgctccagttcccccagccagctctacatcaggaaggagaagtttgcc
ccggccactgcatccacctccagcaacagcagtgggtcatcctgggtacgggcagtccta
aagtacgcagagaagccatacattgtaaagcacccagaggacaaagtgcgctatgaggga
cagcgtgtgatgttatgctgcaaggcagcaggggagcccatgccagacaaatactactgg
tatcacaataggaccctattggaccggaacgtgttcaaatatgaagaggatctggtgctg
agagacctgaagcctgagcagacaggacattattactgtaaagccagcagccagacagga
agcatcaagtcctcacaggcattcctcagcgttatcgctaaaggcatgccggcatgcaac
cccacacctaagaaccacctcattaggctgcccatggactgtgttcagcctgggactgac
tctaagctctacaacgctggccgctgcacccacaacaagtgtgtaggctccctggacttc
gacctgcgctgcagggatggaggtggctactgctgcggggtccagaagatggagagccgg
gtgatcaactgtgggagctacagcctacccatcaaagctgtgactgagtgtggctgcctg
aagtgtgtggtgcccaaggtgcttgtgcgtggcagggtggtcaccgttgacaacgatgaa
ccactgcgtttcgggcacatgtacgttggcaaggagagagtgggcaccacagggtacaaa
ggaggtttcacgctcaatataaccccagatacagagaggctagtggtcaactttgtggat
cccacagaaaaattcattgacactcctaaggtgtttatctttgacaagagagggggctct
gtttaccatgacgtgaaggtgatgagaaagcaggaacctattgatatcaatgctggagag
acaaataccattgacttaggagaaatcaaaggagaggaccccattggacagattgtcata
cctccaaattctttcctcagaaaaaatggggaggtgtacgaaggtacggtgaaagccagt
gtcaccttcattgaccccaggaacatcaccacagctgctgcagcgcctggtgatctcaac
tttgtggacgatgagggtgacatgcttccactgaggacatatgggatgttttccgttgac
ttcagagatgatacgaaccaggaagtcctaggggctggagcggtccaagtactcctagac
acgcagcacgtcaaaatgcaagaacacattcccaaaatgaaactgtggtccctcaaccca
gacacaggtgtctgggaggaggagagtgactttcactacactcagaccacatctggtggt
aatggacggcgcaagcgagaggagcgtactttcctcataggtaatatggaaatcagggag
cgtcgacttttcaacctggatgtgcctgagaaccgccgctgctacgtcaaagtgaggaca
tacatgagtgacaaattcctggccactgagcagttggaaggtgtggtcatcagcctgata
aacttggagcccaagcctggcttttcctctaaccccagagcatggggtcgctttgacagt
gtgataactggacacaacggagcctgtctgccagccttctgtgatgctcaggtgcctgat
gcttacacagcttacgtcacaggcattatgggtggtgaagaactggaagcagctccctca
acccccaagatgaacccaaacatcattggagtgtctcagccatatttagacaagatagac
taccagcgttcagaccacaatgatccagctcttaagaaaacagccttcagaatcaacttg
gcaaaacccaaccccaataatttggaagagaccaacgggccaatatacccctaccagagt
ttaatatcctgtgaaaatgctgaagtcaatgccaaccatttccgattcttcagagtggaa
aaggacaaatacgaatataacgttgtgccctttcaagagaacgacttaacatcgtggaca
ggtgactacctctcttggtggcccaaccctcaagagttcagggcttgcttcatcaaggtc
aagatccagggacaaagggaggttatgataaggtcacagaaccatggaggcacccaccct
gagactgcaggccagctgtacggcatcagagacatccgcagtacccgcgacatgcacgtg
gccaacatctcagcagcttgcctcgagttcaagtgcagtggtatgctctttgaccaagct
gcagtcgataggtccctcatatcagtcctcccacagggcaactgtcggagagttgacatc
aacagcctcttaaaggagtatctgaccaagcacccccctacctcaccgaacaacgagtcc
catgccttcaacatgctggccccagtcgaccccttggggcacaactatggcatctacaca
gtcacggaccagaacccaagggtggcaaaagagatcgccattggacgctgttttgatggt
acctctgacggcttctccagagagatgaagtcagacactggggttgctctgaccttcagc
tgcccagaaaggactttaaccagggagagtctcttccaacgcctccagacaaaccccagc
cagactctgtctcagatggcaagggacatgagggaggcgcaggggctgcaggtccgagga
aggtcctcccgggtagtgacctacccctctgaatccacgagccgcagatccagctcctct
agcaggaggagatctacgatgcggacacagaaccggcagtag
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